Variant report

Variant	rs494745
Chromosome Location	chr1:93576302-93576303
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMED5-5	chr1:93575227-93577419	l_87_chr1:93543457-93583977_testes

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11164845	1.00[JPT][hapmap]
rs11164857	1.00[CHB][hapmap]
rs17381426	1.00[CHB][hapmap]
rs574855	1.00[AFR][1000 genomes]
rs6679750	1.00[AFR][1000 genomes]
rs7521417	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv508404	chr1:93547383-93580012	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830625	chr1:93566378-93735246	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93545800-93578400	Weak transcription	Pancreas	Pancrea
2	chr1:93546200-93602200	Weak transcription	Aorta	Aorta
3	chr1:93547200-93576800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:93547400-93581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:93547600-93580600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:93547600-93580600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:93547600-93600000	Weak transcription	HSMMtube	muscle
8	chr1:93547800-93580600	Weak transcription	Fetal Kidney	kidney
9	chr1:93548000-93601800	Weak transcription	NHLF	lung
10	chr1:93548200-93576600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:93548200-93576600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:93548200-93576800	Weak transcription	Osteobl	bone
13	chr1:93548200-93578400	Weak transcription	Lung	lung
14	chr1:93548800-93581600	Weak transcription	Small Intestine	intestine
15	chr1:93549000-93576800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:93549000-93582400	Weak transcription	HMEC	breast
17	chr1:93549000-93582800	Weak transcription	NHEK	skin
18	chr1:93551400-93579800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:93551600-93578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:93551800-93576600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:93551800-93579800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr1:93552000-93580000	Weak transcription	NH-A	brain
23	chr1:93555400-93581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:93559400-93576600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:93559400-93581000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:93560200-93581600	Weak transcription	Brain Anterior Caudate	brain
27	chr1:93563400-93582000	Weak transcription	Esophagus	oesophagus
28	chr1:93564000-93581800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:93565200-93625200	Weak transcription	Stomach Mucosa	stomach
30	chr1:93566600-93576800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:93568400-93584200	Weak transcription	Fetal Brain Male	brain
32	chr1:93570000-93582200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:93570200-93581600	Weak transcription	Ovary	ovary
34	chr1:93570600-93576800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:93571400-93602200	Weak transcription	Colonic Mucosa	Colon
36	chr1:93571600-93578400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:93571600-93581600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:93572400-93577200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:93572400-93599600	Weak transcription	Spleen	Spleen
40	chr1:93572800-93580400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr1:93573000-93576600	Weak transcription	Fetal Heart	heart
42	chr1:93573000-93580600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr1:93573400-93578400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr1:93573400-93627000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:93573600-93578400	Weak transcription	Thymus	Thymus
46	chr1:93573600-93580600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:93573600-93581000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:93573600-93586000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:93573800-93578400	Weak transcription	Fetal Stomach	stomach
50	chr1:93573800-93580000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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