Variant report

Variant	rs4949916
Chromosome Location	chr1:86074506-86074507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:86073392..86075755-chr1:86077364..86079429,2	MCF-7	breast:
2	chr1:86045532..86047930-chr1:86071624..86075132,3	MCF-7	breast:
3	chr1:86046246..86048052-chr1:86073407..86075472,2	K562	blood:
4	chr1:86073205..86075088-chr1:86076581..86078830,2	K562	blood:
5	chr1:86041793..86044827-chr1:86073934..86077302,3	K562	blood:

Variant related genes	Relation type
ENSG00000153904	Chromatin interaction
ENSG00000272691	Chromatin interaction
ENSG00000142871	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41289757	1.00[AFR][1000 genomes]
rs72944690	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86048800-86081200	Weak transcription	Gastric	stomach
2	chr1:86066600-86077000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:86068000-86074600	Enhancers	Fetal Intestine Small	intestine
4	chr1:86068400-86074800	Enhancers	Fetal Intestine Large	intestine
5	chr1:86070000-86076800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:86070600-86076600	Weak transcription	Fetal Stomach	stomach
7	chr1:86071200-86076600	Weak transcription	Fetal Lung	lung
8	chr1:86071200-86076800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:86071400-86075000	Enhancers	HSMM	muscle
10	chr1:86071400-86075400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:86071600-86074600	Enhancers	HUVEC	blood vessel
12	chr1:86071600-86076600	Enhancers	NHDF-Ad	bronchial
13	chr1:86071600-86078800	Enhancers	NHLF	lung
14	chr1:86071800-86074600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:86071800-86074600	Enhancers	HSMMtube	muscle
16	chr1:86071800-86076800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:86072000-86074600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:86072200-86077600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:86072400-86074600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:86072400-86076600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:86072400-86076600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:86073000-86078200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:86073200-86075200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:86073200-86076800	Weak transcription	Fetal Heart	heart
25	chr1:86073200-86077000	Weak transcription	Ovary	ovary
26	chr1:86073200-86078400	Weak transcription	Pancreas	Pancrea
27	chr1:86073200-86082200	Weak transcription	Aorta	Aorta
28	chr1:86073600-86075400	Weak transcription	Fetal Kidney	kidney
29	chr1:86073600-86076600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:86073600-86076800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:86073600-86078000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:86073800-86074600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr1:86073800-86076600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr1:86073800-86077400	Weak transcription	HepG2	liver
35	chr1:86073800-86078400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:86073800-86078600	Weak transcription	Hela-S3	cervix
37	chr1:86074000-86078400	Enhancers	A549	lung
38	chr1:86074200-86075600	Enhancers	Osteobl	bone
39	chr1:86074200-86076400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:86074200-86076400	Weak transcription	NHEK	skin
41	chr1:86074200-86076600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:86074200-86077400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:86074200-86077800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:86074200-86078000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:86074200-86078400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:86074200-86078400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:86074200-86078400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:86074200-86081200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr1:86074400-86076400	Weak transcription	NH-A	brain
50	chr1:86074400-86076600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links