Variant report

Variant	rs4951499
Chromosome Location	chr1:211248543-211248544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10779549	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11119677	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119679	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1113260	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12027884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124026	0.91[CHB][hapmap];0.93[CHD][hapmap]
rs1416065	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2211038	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4265492	0.91[CHB][hapmap]
rs4511184	0.87[ASN][1000 genomes]
rs4592307	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs4620600	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951493	0.91[CHB][hapmap]
rs4951495	0.83[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap]
rs4951502	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951504	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951716	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6540653	0.82[AFR][1000 genomes]
rs6685217	0.80[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211236000-211248600	Strong transcription	HSMM	muscle
2	chr1:211241600-211249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:211242600-211248800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:211242600-211256400	Weak transcription	A549	lung
5	chr1:211247800-211248800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:211248000-211249000	Strong transcription	HSMMtube	muscle
7	chr1:211248000-211249400	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr1:211248200-211248600	Strong transcription	Brain Anterior Caudate	brain
9	chr1:211248200-211249600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211248200-211249800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:211248200-211250000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:211248400-211248800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:211248400-211249800	ZNF genes & repeats	Brain Angular Gyrus	brain
14	chr1:211248400-211249800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
15	chr1:211248400-211249800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr1:211248400-211250400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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