Variant report
| Variant | rs4951727 |
|---|---|
| Chromosome Location | chr1:211342290-211342291 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SETDB1 | chr1:211342212-211343078 | U2OS | brain: | n/a | n/a |
| 2 | CBX3 | chr1:211342178-211342503 | K562 | blood: | n/a | n/a |
| 3 | KAP1 | chr1:211342203-211342510 | HEK293 | kidney: | n/a | n/a |
| 4 | KAP1 | chr1:211342222-211343212 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234004 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12568832 | 0.81[ASN][1000 genomes] |
| rs12749443 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12758791 | 0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17017239 | 0.92[ASN][1000 genomes] |
| rs2185069 | 0.92[ASN][1000 genomes] |
| rs35286074 | 1.00[AFR][1000 genomes] |
| rs35477371 | 1.00[AFR][1000 genomes] |
| rs35505648 | 0.91[ASN][1000 genomes] |
| rs35835736 | 0.81[ASN][1000 genomes] |
| rs3811394 | 0.84[ASN][1000 genomes] |
| rs4951506 | 1.00[AFR][1000 genomes] |
| rs4951720 | 0.90[ASN][1000 genomes] |
| rs4951725 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55824853 | 0.80[ASN][1000 genomes] |
| rs56317037 | 0.80[ASN][1000 genomes] |
| rs56367975 | 0.80[ASN][1000 genomes] |
| rs71638201 | 1.00[AFR][1000 genomes] |
| rs867847 | 0.92[ASN][1000 genomes] |
| rs867848 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv945276 | chr1:211341161-211348032 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:211342000-211342600 | Active TSS | Primary T cells from cord blood | blood |
