Variant report

Variant	rs4956512
Chromosome Location	chr4:142023984-142023985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10008705	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10029478	0.89[ASN][1000 genomes]
rs10519584	0.85[EUR][1000 genomes]
rs12509440	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13435125	0.89[ASN][1000 genomes]
rs1395668	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1395669	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1873370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2321862	0.98[ASN][1000 genomes]
rs28417061	0.89[ASN][1000 genomes]
rs28457672	0.89[ASN][1000 genomes]
rs28628800	0.89[ASN][1000 genomes]
rs28667926	0.95[ASN][1000 genomes]
rs3913899	0.96[EUR][1000 genomes]
rs4267811	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4386678	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4613644	0.88[ASN][1000 genomes]
rs4629541	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4637487	0.96[EUR][1000 genomes]
rs4956513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4956514	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4956515	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4956516	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4956517	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62324901	0.96[EUR][1000 genomes]
rs62324902	0.96[EUR][1000 genomes]
rs6537030	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6813119	0.98[ASN][1000 genomes]
rs6817313	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6826231	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831578	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6856997	0.88[EUR][1000 genomes]
rs756170	0.88[ASN][1000 genomes]
rs7658695	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669929	0.81[ASN][1000 genomes]
rs7683490	0.96[EUR][1000 genomes]
rs7697519	0.96[EUR][1000 genomes]
rs9790672	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9790673	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880169	chr4:142005573-142038481	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
2	chr4:142010400-142027600	Weak transcription	Left Ventricle	heart
3	chr4:142013000-142040400	Weak transcription	Psoas Muscle	Psoas
4	chr4:142018400-142025800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:142022800-142024200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:142023200-142024200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:142023200-142024400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:142023200-142024400	Enhancers	Hela-S3	cervix
9	chr4:142023200-142027800	Enhancers	Fetal Heart	heart
10	chr4:142023400-142024000	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:142023400-142024200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:142023400-142024200	Enhancers	Colon Smooth Muscle	Colon
13	chr4:142023400-142024400	Enhancers	Osteobl	bone
14	chr4:142023600-142024000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:142023600-142024000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:142023600-142024200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:142023600-142024200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:142023600-142024400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:142023800-142024000	Enhancers	NH-A	brain

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