Variant report

Variant	rs4961493
Chromosome Location	chr9:16553421-16553422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16520489..16522214-chr9:16551948..16553682,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10738435	0.80[EUR][1000 genomes]
rs10756762	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16542600-16564000	Weak transcription	HUVEC	blood vessel
2	chr9:16542800-16554800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:16543800-16554600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:16543800-16567000	Weak transcription	HSMMtube	muscle
5	chr9:16544000-16559600	Weak transcription	Small Intestine	intestine
6	chr9:16545000-16554000	Weak transcription	Fetal Kidney	kidney
7	chr9:16546000-16554600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:16546000-16559600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:16546000-16559800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:16546000-16568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:16550000-16556400	Weak transcription	Fetal Intestine Small	intestine
12	chr9:16550200-16554000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:16550800-16559800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:16551400-16553800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:16551600-16554000	Weak transcription	Fetal Lung	lung
16	chr9:16551800-16567800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:16552000-16559600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:16552000-16567800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:16552200-16559000	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:16552400-16553600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:16552600-16554600	Weak transcription	NH-A	brain
22	chr9:16552600-16555400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:16552600-16556000	Weak transcription	HSMM	muscle
24	chr9:16552800-16553600	Weak transcription	Fetal Stomach	stomach
25	chr9:16552800-16553800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:16552800-16553800	Weak transcription	Ovary	ovary
27	chr9:16552800-16553800	Weak transcription	NHLF	lung
28	chr9:16552800-16554000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:16552800-16554600	Weak transcription	Adipose Nuclei	Adipose
30	chr9:16552800-16554600	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:16552800-16556000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:16552800-16557600	Weak transcription	Fetal Intestine Large	intestine
33	chr9:16552800-16557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:16552800-16558400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:16552800-16559800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:16552800-16566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:16552800-16570200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:16552800-16571000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:16552800-16571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:16553000-16557800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:16553000-16559600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:16553000-16570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:16553000-16575200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:16553200-16553800	Weak transcription	Osteobl	bone
45	chr9:16553200-16554000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr9:16553200-16554600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr9:16553400-16553600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:16553400-16554000	Weak transcription	NHDF-Ad	bronchial
49	chr9:16553400-16554600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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