Variant report

Variant	rs4961593
Chromosome Location	chr9:17770090-17770091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10119271	0.94[EUR][1000 genomes]
rs10810847	0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12377594	0.92[ASN][1000 genomes]
rs17454653	0.84[CHD][hapmap]
rs1886589	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2031456	0.93[EUR][1000 genomes]
rs2296367	0.93[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2383046	0.94[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs2383047	0.89[CHD][hapmap]
rs2891112	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3808669	0.84[CHD][hapmap]
rs3808675	0.98[ASN][1000 genomes]
rs4302941	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs4961591	0.83[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4961594	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026725	0.81[EUR][1000 genomes]
rs7036431	0.82[CHB][hapmap]
rs9406699	0.83[CHD][hapmap]
rs9406708	0.83[CHD][hapmap]
rs9406709	0.82[CHD][hapmap]
rs9406723	0.84[CHD][hapmap]
rs9406724	0.83[CHD][hapmap]
rs9407852	0.83[CHD][hapmap]
rs9407856	0.83[CHD][hapmap]
rs9407857	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17754800-17772600	Weak transcription	Hela-S3	cervix
2	chr9:17764600-17782800	Weak transcription	Gastric	stomach

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