Variant report

Variant	rs496599
Chromosome Location	chr6:65939716-65939717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11962884	0.85[ASN][1000 genomes]
rs11963375	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964615	0.95[ASN][1000 genomes]
rs11965099	0.85[ASN][1000 genomes]
rs11966455	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968810	0.95[ASN][1000 genomes]
rs11969157	0.85[ASN][1000 genomes]
rs16896349	0.85[ASN][1000 genomes]
rs16896350	0.85[ASN][1000 genomes]
rs16896369	0.85[ASN][1000 genomes]
rs16896388	0.93[ASN][1000 genomes]
rs16896389	0.93[ASN][1000 genomes]
rs16896391	0.93[ASN][1000 genomes]
rs16896392	0.87[ASN][1000 genomes]
rs1952995	0.85[ASN][1000 genomes]
rs2639695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2639696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788908	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs475994	0.80[AFR][1000 genomes]
rs494707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs523089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536372	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55739054	0.85[ASN][1000 genomes]
rs56018406	0.93[ASN][1000 genomes]
rs56219837	0.90[ASN][1000 genomes]
rs57499395	0.85[ASN][1000 genomes]
rs593403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs593740	0.91[AFR][1000 genomes]
rs604291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60579257	0.90[ASN][1000 genomes]
rs62407206	0.80[ASN][1000 genomes]
rs624378	0.91[AFR][1000 genomes]
rs636434	0.80[AFR][1000 genomes]
rs72881716	0.85[ASN][1000 genomes]
rs72881736	0.85[ASN][1000 genomes]
rs72881777	0.95[ASN][1000 genomes]
rs72883272	0.96[ASN][1000 genomes]
rs7738259	0.85[ASN][1000 genomes]
rs7775478	0.85[ASN][1000 genomes]
rs841531	0.93[ASN][1000 genomes]
rs9453222	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886010	chr6:65873577-65989292	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015989	chr6:65892380-65955291	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv1033018	chr6:65901568-65943266	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv521670	chr6:65921933-66009103	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1026975	chr6:65927058-65979662	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65939000-65940400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:65939200-65940000	Enhancers	Fetal Lung	lung
3	chr6:65939200-65940400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:65939200-65940400	Enhancers	HUVEC	blood vessel
5	chr6:65939600-65940000	Enhancers	Colon Smooth Muscle	Colon
6	chr6:65939600-65940000	Enhancers	Duodenum Smooth Muscle	Duodenum

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