Variant report

Variant	rs4975246
Chromosome Location	chr4:129664889-129664890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006675	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12506981	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12509070	0.89[EUR][1000 genomes]
rs12509131	0.89[EUR][1000 genomes]
rs12509198	0.89[EUR][1000 genomes]
rs12509201	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13115151	0.87[ASN][1000 genomes]
rs13128507	0.84[ASN][1000 genomes]
rs1425619	0.84[ASN][1000 genomes]
rs1991237	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2391327	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28453786	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4450950	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57872653	0.81[ASN][1000 genomes]
rs6811857	0.86[ASN][1000 genomes]
rs7692380	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1020801	chr4:129658178-129778086	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv537248	chr4:129658178-129778086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129633000-129689600	Weak transcription	Right Atrium	heart
2	chr4:129663400-129672200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links