Variant report

Variant	rs4976725
Chromosome Location	chr5:177876309-177876310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:177871515..177874034-chr5:177875821..177877688,2	MCF-7	breast:
2	chr5:177876265..177878231-chr5:177880241..177881910,2	K562	blood:
3	chr5:177861655..177863245-chr5:177875652..177877153,2	K562	blood:
4	chr5:177876012..177877743-chr5:177880216..177882479,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10050728	1.00[ASN][1000 genomes]
rs10063441	1.00[ASN][1000 genomes]
rs10063674	1.00[ASN][1000 genomes]
rs11956256	1.00[ASN][1000 genomes]
rs11956284	1.00[ASN][1000 genomes]
rs17081205	0.81[TSI][hapmap]
rs28657401	1.00[ASN][1000 genomes]
rs28673403	1.00[ASN][1000 genomes]
rs4357054	0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs4541676	1.00[ASN][1000 genomes]
rs59697910	1.00[ASN][1000 genomes]
rs60667997	1.00[ASN][1000 genomes]
rs62389411	1.00[ASN][1000 genomes]
rs62389412	1.00[ASN][1000 genomes]
rs62389413	1.00[ASN][1000 genomes]
rs6422347	0.81[TSI][hapmap]
rs6601236	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1029822	chr5:177872333-177931889	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1033039	chr5:177873974-177926244	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv537971	chr5:177873974-177926244	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177856800-177887200	Weak transcription	Right Atrium	heart
2	chr5:177871800-177880600	Weak transcription	Fetal Thymus	thymus
3	chr5:177874600-177888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:177875600-177876400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:177875600-177876400	Enhancers	Right Ventricle	heart
6	chr5:177876200-177876400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:177876200-177876400	Active TSS	Brain Cingulate Gyrus	brain
8	chr5:177876200-177876400	Enhancers	Brain Hippocampus Middle	brain
9	chr5:177876200-177876400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr5:177876200-177876400	Bivalent Enhancer	Placenta	Placenta
11	chr5:177876200-177876400	Active TSS	K562	blood
12	chr5:177876200-177876400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
13	chr5:177876200-177876600	Enhancers	Brain Angular Gyrus	brain
14	chr5:177876200-177876800	Bivalent Enhancer	Primary B cells from cord blood	blood
15	chr5:177876200-177877000	Enhancers	Left Ventricle	heart
16	chr5:177876200-177877400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:177876200-177877600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:177876200-177877600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:177876200-177877600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:177876200-177877600	Enhancers	Gastric	stomach
21	chr5:177876200-177877600	Enhancers	Spleen	Spleen
22	chr5:177876200-177877800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:177876200-177877800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:177876200-177878000	Enhancers	Primary monocytes fromperipheralblood	blood

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