Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79642319..79644269-chr16:80128981..80131841,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514481	0.87[AMR][1000 genomes]
rs16952297	0.87[AMR][1000 genomes]
rs16952319	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952339	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952360	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952361	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952363	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952367	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952390	0.85[AFR][1000 genomes]
rs16952423	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952439	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952442	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952472	1.00[EUR][1000 genomes]
rs2126998	1.00[EUR][1000 genomes]
rs4889097	1.00[EUR][1000 genomes]
rs57189314	1.00[EUR][1000 genomes]
rs57824584	1.00[EUR][1000 genomes]
rs57899846	1.00[EUR][1000 genomes]
rs57929477	1.00[EUR][1000 genomes]
rs73583872	0.87[AMR][1000 genomes]
rs73583885	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583898	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73585959	1.00[EUR][1000 genomes]
rs73587910	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80127000-80137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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