Variant report

Variant	rs501160
Chromosome Location	chr11:57012513-57012514
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57011184..57013387-chr11:57014609..57016452,2	K562	blood:
2	chr11:56894402..56895909-chr11:57012164..57014326,2	K562	blood:
3	chr11:57010853..57012684-chr11:57014374..57016452,2	K562	blood:
4	chr11:56992366..56994767-chr11:57010638..57012947,2	K562	blood:
5	chr11:56923234..56925283-chr11:57012223..57015017,2	K562	blood:
6	chr11:56888220..56889882-chr11:57010746..57012751,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12296071	1.00[AMR][1000 genomes]
rs1262323	1.00[AMR][1000 genomes]
rs2508769	1.00[AMR][1000 genomes]
rs2508771	1.00[AMR][1000 genomes]
rs2846040	1.00[AMR][1000 genomes]
rs2846043	1.00[AMR][1000 genomes]
rs2846045	1.00[AMR][1000 genomes]
rs2846047	1.00[AMR][1000 genomes]
rs2846048	1.00[AMR][1000 genomes]
rs2851724	1.00[AMR][1000 genomes]
rs481516	1.00[AMR][1000 genomes]
rs546403	1.00[AMR][1000 genomes]
rs559168	1.00[AMR][1000 genomes]
rs639248	1.00[AMR][1000 genomes]
rs641550	1.00[AMR][1000 genomes]
rs652353	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:57009600-57012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:57009600-57016600	Weak transcription	Liver	Liver
5	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:57010000-57012800	Weak transcription	Gastric	stomach
7	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:57011000-57015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:57012000-57013200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:57012000-57013200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:57012000-57013400	Enhancers	Spleen	Spleen
12	chr11:57012200-57012600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:57012200-57013000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:57012200-57013000	Enhancers	Right Atrium	heart
15	chr11:57012200-57013200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:57012200-57013200	Enhancers	Adipose Nuclei	Adipose
17	chr11:57012200-57013200	Enhancers	Left Ventricle	heart
18	chr11:57012200-57013200	Enhancers	Lung	lung
19	chr11:57012200-57013200	Enhancers	HUVEC	blood vessel
20	chr11:57012400-57012800	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:57012400-57012800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:57012400-57013000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr11:57012400-57013000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:57012400-57013000	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:57012400-57013000	Enhancers	Right Ventricle	heart
26	chr11:57012400-57013200	Enhancers	Fetal Muscle Leg	muscle
27	chr11:57012400-57013200	Enhancers	Placenta	Placenta
28	chr11:57012400-57016400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links