Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr16:80573472-80575175	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80573239..80577400-chr16:80578381..80583465,6	MCF-7	breast:
2	chr16:80573192..80575392-chr16:80605742..80608359,2	MCF-7	breast:
3	chr16:80573111..80574963-chr16:80576346..80580119,3	K562	blood:
4	chr16:80572758..80574587-chr16:80801032..80802655,2	MCF-7	breast:
5	chr16:80573487..80575142-chr16:80836688..80838672,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4307962	1.00[LWK][hapmap]
rs4561480	1.00[ASW][hapmap];0.90[LWK][hapmap]
rs4622521	1.00[ASW][hapmap]
rs7202313	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8061925	1.00[ASW][hapmap];0.92[LWK][hapmap]
rs8062532	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs9922406	1.00[ASW][hapmap];0.92[LWK][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5012968	CD3D	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80573600-80574000	Active TSS	Brain Angular Gyrus	brain
2	chr16:80573600-80574400	Active TSS	Primary hematopoietic stem cells	blood

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