Variant report

Variant	rs5022942
Chromosome Location	chr4:81959966-81959967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10007784	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12642476	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1495637	0.89[EUR][1000 genomes]
rs4389567	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs985328	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81954800-81960200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:81954800-81960200	Weak transcription	Ovary	ovary
3	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:81955400-81967200	Weak transcription	Fetal Stomach	stomach
5	chr4:81958800-81961800	Enhancers	Colon Smooth Muscle	Colon
6	chr4:81958800-81961800	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:81959200-81960800	Enhancers	Stomach Smooth Muscle	stomach
8	chr4:81959600-81961600	Enhancers	Fetal Intestine Small	intestine
9	chr4:81959800-81961200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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