The 2.0 version of rSNPBase

Variant report

Variant rs5028523
Chromosome Location chr1:172864224-172864225
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172862200-172864400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr1:172862600-172865200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:172862800-172864400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:172862800-172864400 Weak transcription NH-A brain
5 chr1:172862800-172866800 Weak transcription HMEC breast
6 chr1:172863000-172864400 Weak transcription Osteobl bone
7 chr1:172863400-172864400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:172863400-172864600 Enhancers K562 blood
9 chr1:172863400-172865200 Enhancers Primary B cells from peripheral blood blood
10 chr1:172863400-172865200 Enhancers Primary hematopoietic stem cells blood
11 chr1:172863600-172864600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
12 chr1:172863600-172864600 Enhancers Thymus Thymus
13 chr1:172863600-172865000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:172863600-172865200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:172863600-172865200 Enhancers Primary hematopoietic stem cells short term culture blood
16 chr1:172863600-172865200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:172863600-172865200 Enhancers Stomach Mucosa stomach
18 chr1:172863600-172865800 Enhancers Placenta Amnion Placenta Amnion
19 chr1:172863800-172864400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
20 chr1:172863800-172864400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
21 chr1:172863800-172864400 Enhancers Psoas Muscle Psoas
22 chr1:172863800-172864600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
23 chr1:172863800-172864600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
24 chr1:172863800-172865000 Flanking Active TSS Dnd41 blood
25 chr1:172863800-172865000 Flanking Active TSS GM12878-XiMat blood
26 chr1:172863800-172865200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:172863800-172865200 Enhancers HSMMtube muscle
28 chr1:172864000-172864400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:172864000-172864400 Flanking Active TSS Hela-S3 cervix
30 chr1:172864000-172864600 Flanking Active TSS Primary B cells from cord blood blood
31 chr1:172864000-172864600 Flanking Active TSS Primary T cells from cord blood blood
32 chr1:172864000-172864600 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
33 chr1:172864000-172864600 Enhancers Right Atrium heart
34 chr1:172864000-172864600 Flanking Active TSS A549 lung
35 chr1:172864000-172864800 Active TSS Rectal Mucosa Donor 29 rectum
36 chr1:172864000-172865000 Enhancers Primary mononuclear cells fromperipheralblood Blood
37 chr1:172864000-172865600 Enhancers HSMM muscle
38 chr1:172864200-172864400 Active TSS Primary T regulatory cells fromperipheralblood blood
39 chr1:172864200-172864400 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
40 chr1:172864200-172864400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:172864200-172864400 Flanking Active TSS Stomach Smooth Muscle stomach
42 chr1:172864200-172864400 Active TSS NHEK skin
43 chr1:172864200-172864600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:172864200-172864600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:172864200-172864600 Active TSS Primary T cells fromperipheralblood blood
46 chr1:172864200-172864600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
47 chr1:172864200-172864600 Active TSS Primary T helper naive cells fromperipheralblood blood
48 chr1:172864200-172864600 Flanking Active TSS Muscle Satellite Cultured Cells --
49 chr1:172864200-172864600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr1:172864200-172864600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015