Variant report

Variant	rs503387
Chromosome Location	chr6:101805331-101805332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101798733..101801184-chr6:101804475..101806686,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10457930	1.00[ASN][1000 genomes]
rs12208565	1.00[ASN][1000 genomes]
rs1222375	1.00[ASN][1000 genomes]
rs1948050	0.88[EUR][1000 genomes]
rs2254178	1.00[ASN][1000 genomes]
rs2399557	1.00[ASN][1000 genomes]
rs2518173	0.88[EUR][1000 genomes]
rs2518319	0.88[EUR][1000 genomes]
rs2579929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2629982	0.88[EUR][1000 genomes]
rs2764271	1.00[ASN][1000 genomes]
rs2787573	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283186	0.81[EUR][1000 genomes]
rs2852497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852500	0.90[EUR][1000 genomes]
rs2852502	0.89[EUR][1000 genomes]
rs2852503	0.89[EUR][1000 genomes]
rs2852504	0.90[EUR][1000 genomes]
rs2852505	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852506	0.90[EUR][1000 genomes]
rs2852507	0.90[EUR][1000 genomes]
rs2852509	0.90[EUR][1000 genomes]
rs2852510	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852511	0.90[EUR][1000 genomes]
rs2852512	0.90[EUR][1000 genomes]
rs2852513	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852514	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471631	0.81[EUR][1000 genomes]
rs473846	0.81[EUR][1000 genomes]
rs480221	0.81[EUR][1000 genomes]
rs484819	0.81[EUR][1000 genomes]
rs489458	0.81[EUR][1000 genomes]
rs493123	0.81[EUR][1000 genomes]
rs496596	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500305	0.81[EUR][1000 genomes]
rs504406	0.81[EUR][1000 genomes]
rs504408	0.81[EUR][1000 genomes]
rs528879	0.81[EUR][1000 genomes]
rs542820	0.81[EUR][1000 genomes]
rs542923	0.83[EUR][1000 genomes]
rs546327	0.81[EUR][1000 genomes]
rs566507	0.85[EUR][1000 genomes]
rs570556	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577503	0.81[EUR][1000 genomes]
rs579069	0.90[EUR][1000 genomes]
rs584655	0.81[EUR][1000 genomes]
rs594870	0.81[EUR][1000 genomes]
rs600842	0.81[EUR][1000 genomes]
rs608847	0.81[EUR][1000 genomes]
rs62419629	1.00[ASN][1000 genomes]
rs626262	1.00[ASN][1000 genomes]
rs632956	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636796	0.81[EUR][1000 genomes]
rs638255	0.81[EUR][1000 genomes]
rs643101	1.00[ASN][1000 genomes]
rs658318	1.00[ASN][1000 genomes]
rs661064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662360	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs662916	0.81[EUR][1000 genomes]
rs668267	0.81[EUR][1000 genomes]
rs675259	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs683149	0.81[EUR][1000 genomes]
rs684160	0.81[EUR][1000 genomes]
rs685002	0.81[EUR][1000 genomes]
rs687497	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697438	1.00[ASN][1000 genomes]
rs697440	0.81[EUR][1000 genomes]
rs697441	0.81[EUR][1000 genomes]
rs72958632	1.00[ASN][1000 genomes]
rs808952	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101800000-101805400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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