The 2.0 version of rSNPBase

Variant report

Variant rs507452
Chromosome Location chr1:92559886-92559887
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92552000-92577400 Weak transcription Fetal Brain Male brain
2 chr1:92552200-92580400 Weak transcription Aorta Aorta
3 chr1:92552200-92583800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:92552400-92567000 Weak transcription Fetal Stomach stomach
5 chr1:92552400-92586000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:92552400-92595200 Weak transcription Primary T cells fromperipheralblood blood
7 chr1:92552600-92566800 Weak transcription Adipose Nuclei Adipose
8 chr1:92552600-92568200 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:92552600-92568800 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr1:92552600-92568800 Weak transcription Fetal Lung lung
11 chr1:92552600-92568800 Weak transcription Placenta Placenta
12 chr1:92552600-92568800 Weak transcription Dnd41 blood
13 chr1:92552600-92579200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:92552600-92582400 Weak transcription Duodenum Mucosa Duodenum
15 chr1:92552600-92590000 Weak transcription Brain Angular Gyrus brain
16 chr1:92552600-92591600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:92552600-92613400 Weak transcription Stomach Smooth Muscle stomach
18 chr1:92552800-92560200 Weak transcription Primary T cells from cord blood blood
19 chr1:92552800-92569800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:92552800-92579000 Weak transcription Psoas Muscle Psoas
21 chr1:92552800-92613600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:92553000-92561400 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:92553000-92570000 Weak transcription Fetal Intestine Large intestine
24 chr1:92553200-92576600 Weak transcription Fetal Muscle Leg muscle
25 chr1:92553800-92575800 Weak transcription Fetal Kidney kidney
26 chr1:92554400-92583200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:92554600-92560600 Weak transcription Brain Substantia Nigra brain
28 chr1:92555200-92580400 Weak transcription Fetal Intestine Small intestine
29 chr1:92555200-92620400 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:92555400-92573400 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:92555400-92580400 Weak transcription Ovary ovary
32 chr1:92555800-92568800 Weak transcription Brain Germinal Matrix brain
33 chr1:92555800-92576000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:92556000-92560800 Weak transcription Brain Hippocampus Middle brain
35 chr1:92556000-92613600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:92556400-92561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:92556600-92613400 Weak transcription Fetal Brain Female brain
38 chr1:92557000-92571800 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr1:92557400-92598000 Weak transcription Spleen Spleen
40 chr1:92558000-92583000 Weak transcription Primary hematopoietic stem cells blood
41 chr1:92558000-92604000 Weak transcription Left Ventricle heart
42 chr1:92558200-92561800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:92558800-92568200 Weak transcription Liver Liver
44 chr1:92559200-92560000 Enhancers Brain Anterior Caudate brain
45 chr1:92559400-92560000 Enhancers Brain Inferior Temporal Lobe brain
46 chr1:92559800-92561200 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015