Variant report

Variant	rs509968
Chromosome Location	chr11:59823135-59823136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1151102	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs663925	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59822200-59823600	Enhancers	K562	blood
2	chr11:59822400-59823200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:59822400-59823400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr11:59822400-59826400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:59822600-59824200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:59822600-59824600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:59822600-59824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:59822800-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:59822800-59832000	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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