Variant report

Variant	rs514933
Chromosome Location	chr11:71930207-71930208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71928745..71931355-chr11:71933643..71936077,2	MCF-7	breast:
2	chr11:71929797..71931441-chr11:71932339..71934152,2	MCF-7	breast:
3	chr11:71927693..71930362-chr11:71935799..71938358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs651646	0.84[YRI][hapmap]
rs651933	0.81[LWK][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv897908	chr11:71927468-71956890	ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897909	chr11:71927468-71960554	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71927400-71930400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:71927800-71930400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:71928000-71933600	Weak transcription	Pancreas	Pancrea
4	chr11:71929400-71933000	Weak transcription	Fetal Thymus	thymus
5	chr11:71929400-71933200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:71929400-71933400	Weak transcription	Primary T cells from cord blood	blood
7	chr11:71929600-71931800	Weak transcription	GM12878-XiMat	blood
8	chr11:71929600-71932600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:71929600-71932600	Weak transcription	K562	blood
10	chr11:71929600-71933600	Weak transcription	Colonic Mucosa	Colon
11	chr11:71929800-71930400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:71929800-71931800	Weak transcription	Primary B cells from cord blood	blood
13	chr11:71929800-71931800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:71929800-71932400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:71929800-71932400	Weak transcription	Spleen	Spleen
16	chr11:71929800-71933400	Weak transcription	Lung	lung
17	chr11:71929800-71933600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:71930000-71930400	Enhancers	Adipose Nuclei	Adipose
19	chr11:71930000-71930400	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:71930000-71931600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:71930000-71931800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:71930000-71932200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:71930000-71932200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:71930000-71932200	Weak transcription	Placenta	Placenta

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