Variant report

Variant	rs515672
Chromosome Location	chr15:53501227-53501228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10163134	0.96[ASN][1000 genomes]
rs10775152	0.96[ASN][1000 genomes]
rs10851535	0.96[ASN][1000 genomes]
rs10851536	0.96[ASN][1000 genomes]
rs11070964	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070965	0.96[ASN][1000 genomes]
rs11070966	0.90[ASN][1000 genomes]
rs11632242	0.96[ASN][1000 genomes]
rs11632523	0.96[ASN][1000 genomes]
rs11633541	0.96[ASN][1000 genomes]
rs11857258	0.96[ASN][1000 genomes]
rs1211489	0.98[ASN][1000 genomes]
rs12593169	0.96[ASN][1000 genomes]
rs12901316	0.96[ASN][1000 genomes]
rs12908835	0.96[ASN][1000 genomes]
rs12916160	0.96[ASN][1000 genomes]
rs12916317	0.96[ASN][1000 genomes]
rs1317100	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1356861	0.96[ASN][1000 genomes]
rs1520413	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17660118	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1911687	0.96[ASN][1000 genomes]
rs2048168	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2661576	0.90[ASN][1000 genomes]
rs4109296	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4109297	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4109298	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4265756	0.89[ASN][1000 genomes]
rs4545759	0.96[ASN][1000 genomes]
rs4551981	0.96[ASN][1000 genomes]
rs4577024	0.96[ASN][1000 genomes]
rs4774653	0.93[ASN][1000 genomes]
rs4774657	0.89[ASN][1000 genomes]
rs4776119	0.96[ASN][1000 genomes]
rs4776120	0.96[ASN][1000 genomes]
rs4776121	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477800	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs479319	0.89[ASN][1000 genomes]
rs479747	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs482541	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs482662	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs483479	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs493218	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500895	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs508421	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs511352	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515943	0.85[ASN][1000 genomes]
rs516920	0.96[ASN][1000 genomes]
rs518127	0.88[AFR][1000 genomes]
rs523116	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs524607	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs534887	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535851	0.89[ASN][1000 genomes]
rs545164	0.89[ASN][1000 genomes]
rs549391	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs551494	0.89[ASN][1000 genomes]
rs553000	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs558995	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs559926	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs565238	0.86[ASN][1000 genomes]
rs566369	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566855	0.85[ASN][1000 genomes]
rs572221	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs577263	0.96[ASN][1000 genomes]
rs6493613	0.96[ASN][1000 genomes]
rs6493614	0.96[ASN][1000 genomes]
rs6493615	0.96[ASN][1000 genomes]
rs6493617	0.96[ASN][1000 genomes]
rs689652	0.89[ASN][1000 genomes]
rs689818	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs690264	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs690271	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs690283	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690379	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs690399	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690449	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs690538	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7167895	0.96[ASN][1000 genomes]
rs7171938	0.96[ASN][1000 genomes]
rs7172105	0.96[ASN][1000 genomes]
rs8027357	0.96[ASN][1000 genomes]
rs8027387	0.96[ASN][1000 genomes]
rs8027674	0.96[ASN][1000 genomes]
rs8032350	0.96[ASN][1000 genomes]
rs8042542	0.96[ASN][1000 genomes]
rs8043044	0.96[ASN][1000 genomes]
rs9284297	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931916	0.96[ASN][1000 genomes]
rs931917	0.89[ASN][1000 genomes]
rs931918	0.96[ASN][1000 genomes]
rs931919	0.96[ASN][1000 genomes]
rs9920052	0.96[ASN][1000 genomes]
rs9920871	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53495200-53503000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:53498800-53505800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:53500800-53501400	Enhancers	Liver	Liver
4	chr15:53501000-53501400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:53501000-53501400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:53501000-53501800	Enhancers	A549	lung
7	chr15:53501200-53503400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links