The 2.0 version of rSNPBase

Variant report

Variant rs517404
Chromosome Location chr1:92585717-92585718
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92552400-92586000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:92552400-92595200 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:92552600-92590000 Weak transcription Brain Angular Gyrus brain
4 chr1:92552600-92591600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:92552600-92613400 Weak transcription Stomach Smooth Muscle stomach
6 chr1:92552800-92613600 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:92555200-92620400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:92556000-92613600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:92556600-92613400 Weak transcription Fetal Brain Female brain
10 chr1:92557400-92598000 Weak transcription Spleen Spleen
11 chr1:92558000-92604000 Weak transcription Left Ventricle heart
12 chr1:92560000-92613600 Weak transcription Brain Anterior Caudate brain
13 chr1:92560600-92590800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:92561200-92619600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:92561600-92590000 Weak transcription Brain Substantia Nigra brain
16 chr1:92567200-92624200 Weak transcription Fetal Stomach stomach
17 chr1:92567400-92618000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:92568200-92616400 Weak transcription Colon Smooth Muscle Colon
19 chr1:92569400-92595600 Weak transcription Brain Germinal Matrix brain
20 chr1:92569800-92613600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:92570000-92619600 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:92570400-92589400 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:92570800-92594800 Weak transcription Fetal Intestine Large intestine
24 chr1:92571800-92601600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:92571800-92613400 Weak transcription Dnd41 blood
26 chr1:92572000-92613400 Weak transcription Brain Hippocampus Middle brain
27 chr1:92574000-92613400 Weak transcription Fetal Lung lung
28 chr1:92576200-92595800 Weak transcription Adipose Nuclei Adipose
29 chr1:92580800-92590800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:92580800-92595200 Weak transcription Ovary ovary
31 chr1:92580800-92615200 Weak transcription Lung lung
32 chr1:92580800-92619000 Weak transcription Pancreas Pancrea
33 chr1:92581000-92590800 Weak transcription Aorta Aorta
34 chr1:92581400-92597200 Weak transcription Fetal Intestine Small intestine
35 chr1:92581400-92613600 Weak transcription Liver Liver
36 chr1:92584200-92589200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:92584200-92589200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:92584200-92589400 Weak transcription Primary hematopoietic stem cells blood
39 chr1:92584200-92589400 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr1:92584400-92588600 Weak transcription Primary T cells from cord blood blood
41 chr1:92584600-92585800 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015