Variant report

Variant	rs518725
Chromosome Location	chr3:23020925-23020926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1094607	0.83[EUR][1000 genomes]
rs115374	0.88[EUR][1000 genomes]
rs1355740	0.86[EUR][1000 genomes]
rs1817581	0.83[EUR][1000 genomes]
rs1849478	0.86[EUR][1000 genomes]
rs2171030	0.83[EUR][1000 genomes]
rs2359367	0.82[EUR][1000 genomes]
rs2688414	0.82[EUR][1000 genomes]
rs582089	0.85[EUR][1000 genomes]
rs603056	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550719	0.84[EUR][1000 genomes]
rs683436	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23016600-23021000	Weak transcription	Ovary	ovary
2	chr3:23018800-23021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:23019200-23024800	Enhancers	Fetal Heart	heart
4	chr3:23019400-23021400	Enhancers	Left Ventricle	heart
5	chr3:23019600-23021200	Weak transcription	Lung	lung
6	chr3:23019600-23022000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:23020600-23021600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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