Variant report

Variant	rs520582
Chromosome Location	chr3:23021133-23021134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs506284	0.87[EUR][1000 genomes]
rs528649	0.86[EUR][1000 genomes]
rs529219	0.95[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs535689	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs537660	0.87[EUR][1000 genomes]
rs549968	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55652823	0.81[EUR][1000 genomes]
rs601598	0.85[EUR][1000 genomes]
rs621200	0.87[EUR][1000 genomes]
rs633464	0.83[EUR][1000 genomes]
rs711725	0.87[EUR][1000 genomes]
rs822768	0.87[EUR][1000 genomes]
rs822775	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs822776	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23019200-23024800	Enhancers	Fetal Heart	heart
2	chr3:23019400-23021400	Enhancers	Left Ventricle	heart
3	chr3:23019600-23021200	Weak transcription	Lung	lung
4	chr3:23019600-23022000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:23020600-23021600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr3:23021000-23022200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:23021000-23022400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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