Variant report

Variant	rs523311
Chromosome Location	chr6:75065517-75065518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1022747	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1971460	0.86[AFR][1000 genomes]
rs2246936	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2635108	0.93[EUR][1000 genomes]
rs278331	0.90[EUR][1000 genomes]
rs278333	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs278351	0.90[ASN][1000 genomes]
rs666415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913433	0.90[EUR][1000 genomes]
rs795859	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75061200-75065600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:75061600-75066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:75061600-75067000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:75061800-75065600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:75062000-75065800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:75064800-75065800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:75064800-75066000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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