The 2.0 version of rSNPBase

Variant report

Variant rs524989
Chromosome Location chr1:92641675-92641676
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92609800-92651200 Weak transcription Fetal Kidney kidney
2 chr1:92613400-92645400 Weak transcription Gastric stomach
3 chr1:92615600-92646000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:92620600-92646000 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr1:92620800-92645800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:92621000-92646800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:92625000-92646800 Weak transcription Pancreas Pancrea
8 chr1:92625000-92648200 Weak transcription Fetal Stomach stomach
9 chr1:92625400-92642600 Weak transcription Fetal Lung lung
10 chr1:92625600-92651000 Weak transcription Stomach Smooth Muscle stomach
11 chr1:92626200-92642600 Weak transcription Brain Hippocampus Middle brain
12 chr1:92626200-92646000 Weak transcription Psoas Muscle Psoas
13 chr1:92626200-92652000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:92626400-92643000 Weak transcription Fetal Intestine Large intestine
15 chr1:92626400-92644200 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:92626600-92644000 Weak transcription Liver Liver
17 chr1:92626600-92648400 Weak transcription Fetal Intestine Small intestine
18 chr1:92626600-92650800 Weak transcription Duodenum Mucosa Duodenum
19 chr1:92626600-92657400 Weak transcription Right Ventricle heart
20 chr1:92626800-92646600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:92626800-92650000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:92626800-92651400 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:92627800-92648200 Weak transcription Lung lung
24 chr1:92628000-92643200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:92628000-92645800 Weak transcription Primary hematopoietic stem cells blood
26 chr1:92628000-92645800 Weak transcription Left Ventricle heart
27 chr1:92628000-92646000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:92628000-92648600 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:92628200-92642600 Weak transcription Adipose Nuclei Adipose
30 chr1:92628200-92645800 Weak transcription Primary T cells from cord blood blood
31 chr1:92628200-92645800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr1:92628200-92646000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:92628200-92651800 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:92628400-92645800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:92628400-92646800 Weak transcription Aorta Aorta
36 chr1:92632800-92648800 Weak transcription Primary T cells fromperipheralblood blood
37 chr1:92633800-92649400 Weak transcription HSMMtube muscle
38 chr1:92634200-92645800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr1:92634600-92647200 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:92635200-92650400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:92635400-92646200 Weak transcription Brain Germinal Matrix brain
42 chr1:92635600-92648400 Weak transcription Rectal Smooth Muscle rectum
43 chr1:92635800-92645800 Weak transcription Brain Anterior Caudate brain
44 chr1:92636000-92642400 Weak transcription Brain Cingulate Gyrus brain
45 chr1:92636000-92645800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:92636000-92646000 Weak transcription Fetal Brain Male brain
47 chr1:92636200-92651000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr1:92636400-92642600 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr1:92636800-92652400 Weak transcription Fetal Brain Female brain
50 chr1:92637000-92647400 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015