Variant report

Variant	rs527278255
Chromosome Location	chr10:52500855-52500856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52382538..52386733-chr10:52497918..52501112,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1825222	chr10:52477544-52527856	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948008	chr10:52500270-52536321	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52499400-52501000	Active TSS	Stomach Smooth Muscle	stomach
2	chr10:52500400-52501200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:52500600-52501000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:52500600-52501000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:52500600-52501000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:52500600-52501000	Enhancers	Liver	Liver
7	chr10:52500600-52501000	Enhancers	HMEC	breast
8	chr10:52500600-52501000	Active TSS	K562	blood
9	chr10:52500600-52501000	Enhancers	NHEK	skin
10	chr10:52500600-52503200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:52500600-52503200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:52500600-52503400	Weak transcription	Fetal Lung	lung
13	chr10:52500600-52503600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:52500600-52505200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:52500600-52512200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:52500800-52501000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:52500800-52501200	Enhancers	Brain Hippocampus Middle	brain
18	chr10:52500800-52501200	Enhancers	Fetal Intestine Small	intestine
19	chr10:52500800-52503200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:52500800-52503400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:52500800-52507400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:52500800-52508600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links