Variant report

Variant	rs527669640
Chromosome Location	chr8:10859557-10859558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3339026	chr8:10858742-10862940	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10855600-10859600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:10855600-10859600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:10856200-10864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:10856400-10859600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:10858400-10860200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr8:10859000-10859800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:10859200-10859800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:10859200-10860000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:10859200-10860000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:10859200-10860000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:10859200-10860200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:10859200-10860200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:10859200-10860200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:10859200-10860200	Enhancers	Esophagus	oesophagus
15	chr8:10859200-10860400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10859200-10860400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:10859400-10860000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:10859400-10865200	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links