Variant report

Variant	rs528095685
Chromosome Location	chr1:224198662-224198663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv873215	chr1:224075483-224204433	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv873216	chr1:224075483-224230307	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv873218	chr1:224097155-224204433	Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv873219	chr1:224097155-224216822	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv873220	chr1:224097155-224223659	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv549241	chr1:224103992-224216757	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv549242	chr1:224115297-224203918	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv549243	chr1:224115297-224216757	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv549244	chr1:224183599-224202820	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv549245	chr1:224183599-224203686	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv549246	chr1:224183599-224203833	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv549247	chr1:224183599-224203918	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv549248	chr1:224183599-224216757	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv549249	chr1:224183599-224216822	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv2457419	chr1:224184276-224201973	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv1847784	chr1:224185036-224227122	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv1795476	chr1:224186148-224226044	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv3350171	chr1:224198229-224205327	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	n/a
22	esv3393344	chr1:224198229-224205427	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224181200-224199200	Weak transcription	Brain Substantia Nigra	brain
2	chr1:224181400-224199200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:224181600-224199000	Weak transcription	Fetal Stomach	stomach
4	chr1:224181600-224199200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:224181600-224199200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:224181600-224199200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:224181600-224199200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:224181600-224199200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:224181600-224199200	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:224181600-224199400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:224181600-224199400	Weak transcription	NH-A	brain
12	chr1:224181800-224199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:224181800-224199200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:224181800-224199200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:224181800-224199200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:224181800-224199200	Weak transcription	Brain Anterior Caudate	brain
17	chr1:224181800-224199200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:224181800-224199200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:224181800-224199200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:224181800-224199200	Weak transcription	Fetal Kidney	kidney
21	chr1:224181800-224199200	Weak transcription	Ovary	ovary
22	chr1:224181800-224199200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:224181800-224199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:224181800-224201800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:224182200-224198800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:224182200-224199000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:224182200-224199000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:224182200-224199000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:224182200-224199200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr1:224182200-224199200	Weak transcription	Dnd41	blood
31	chr1:224182200-224199200	Weak transcription	GM12878-XiMat	blood
32	chr1:224184800-224199200	Weak transcription	Left Ventricle	heart
33	chr1:224187200-224199000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:224187200-224199200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:224188200-224199200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:224188400-224199200	Weak transcription	Fetal Lung	lung
37	chr1:224188400-224199200	Weak transcription	NHDF-Ad	bronchial
38	chr1:224190000-224199200	Weak transcription	Gastric	stomach
39	chr1:224190600-224199200	Weak transcription	HUVEC	blood vessel
40	chr1:224190800-224199200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:224190800-224199200	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:224191600-224199200	Weak transcription	Brain Angular Gyrus	brain
43	chr1:224191800-224199200	Weak transcription	Pancreas	Pancrea
44	chr1:224192200-224199000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr1:224192600-224199200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:224192800-224199200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr1:224192800-224199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:224192800-224199200	Weak transcription	K562	blood
49	chr1:224193000-224199000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:224193000-224199200	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links