Variant report

Variant	rs528588979
Chromosome Location	chr4:88059180-88059181
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:88052295..88054243-chr4:88057778..88059359,2	K562	blood:
2	chr4:88052295..88056117-chr4:88057226..88059764,4	K562	blood:
3	chr4:88057518..88060731-chr4:88068893..88070799,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv964300	chr4:88058711-88061227	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2270638	chr4:88059181-88059182	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88019000-88072200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:88026400-88063600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:88035600-88063800	Strong transcription	Primary T cells from cord blood	blood
4	chr4:88036400-88063600	Weak transcription	Fetal Brain Male	brain
5	chr4:88036800-88059200	Weak transcription	Fetal Brain Female	brain
6	chr4:88042800-88069400	Strong transcription	Placenta	Placenta
7	chr4:88043000-88061400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr4:88043400-88064800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:88043600-88064600	Strong transcription	GM12878-XiMat	blood
10	chr4:88044400-88060800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:88044600-88059200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr4:88044600-88060200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:88044600-88061400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr4:88044600-88061600	Strong transcription	Fetal Intestine Large	intestine
15	chr4:88044600-88062200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:88044600-88067600	Strong transcription	Primary B cells from cord blood	blood
17	chr4:88044800-88059400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr4:88044800-88061400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:88044800-88061600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr4:88045000-88060400	Strong transcription	Primary hematopoietic stem cells	blood
21	chr4:88045600-88059200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:88045600-88059600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:88045600-88060400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:88045600-88063800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:88045600-88063800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:88045800-88059200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:88045800-88059800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:88045800-88061200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:88045800-88061400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:88045800-88063000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:88045800-88067600	Strong transcription	Fetal Thymus	thymus
32	chr4:88046000-88059200	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:88046000-88059400	Strong transcription	Dnd41	blood
34	chr4:88046000-88061400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr4:88046200-88059200	Strong transcription	Ovary	ovary
36	chr4:88046200-88059800	Strong transcription	Fetal Lung	lung
37	chr4:88046200-88061200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:88046200-88061400	Strong transcription	Adipose Nuclei	Adipose
39	chr4:88046200-88061400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr4:88046200-88064200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:88046400-88059200	Strong transcription	Brain Hippocampus Middle	brain
42	chr4:88046400-88059200	Strong transcription	Fetal Stomach	stomach
43	chr4:88046600-88059400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:88047200-88067000	Strong transcription	Liver	Liver
45	chr4:88047800-88064200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:88048000-88059200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:88049400-88059800	Strong transcription	HepG2	liver
48	chr4:88049400-88064200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:88050200-88059400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr4:88050800-88059200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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