Variant report

Variant	rs528601406
Chromosome Location	chr11:76670271-76670272
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76631600-76671600	Weak transcription	Ovary	ovary
3	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
4	chr11:76646200-76670600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:76646600-76688000	Weak transcription	HMEC	breast
6	chr11:76647200-76671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:76647200-76673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76648400-76671600	Weak transcription	Spleen	Spleen
10	chr11:76649600-76672000	Weak transcription	Aorta	Aorta
11	chr11:76650600-76681200	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76655800-76671600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:76655800-76674200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:76655800-76681800	Weak transcription	Primary B cells from cord blood	blood
15	chr11:76656200-76677000	Weak transcription	Brain Anterior Caudate	brain
16	chr11:76656400-76671200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:76657000-76674600	Weak transcription	Fetal Stomach	stomach
18	chr11:76657000-76676600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:76657200-76688400	Weak transcription	Gastric	stomach
20	chr11:76657600-76671600	Weak transcription	Lung	lung
21	chr11:76657600-76672600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:76659600-76673600	Weak transcription	Small Intestine	intestine
23	chr11:76659800-76673400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:76659800-76673600	Weak transcription	Primary T cells from cord blood	blood
25	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:76660200-76672800	Weak transcription	Fetal Intestine Small	intestine
27	chr11:76661200-76673800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76661200-76674600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:76661800-76673400	Weak transcription	Pancreas	Pancrea
30	chr11:76662000-76671400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:76662800-76673600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:76663000-76671600	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:76663000-76674600	Weak transcription	Liver	Liver
34	chr11:76664200-76673200	Weak transcription	Fetal Intestine Large	intestine
35	chr11:76665200-76673400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
37	chr11:76666800-76671600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:76666800-76671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:76666800-76673600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:76666800-76677600	Weak transcription	Hela-S3	cervix
41	chr11:76666800-76695400	Weak transcription	NHEK	skin
42	chr11:76667400-76673800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr11:76667600-76673400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:76667800-76673800	Weak transcription	Brain Angular Gyrus	brain
45	chr11:76667800-76674400	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:76668400-76673400	Weak transcription	Dnd41	blood
47	chr11:76668600-76673400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:76668600-76673600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:76668800-76671600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:76668800-76671800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links