Variant report

Variant	rs528649
Chromosome Location	chr3:23051934-23051935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs506284	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs520582	0.86[EUR][1000 genomes]
rs529219	0.80[CEU][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs535689	0.87[EUR][1000 genomes]
rs537660	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs549968	0.84[CEU][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs55652823	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs601598	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs621200	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs633464	0.93[EUR][1000 genomes]
rs711725	0.98[EUR][1000 genomes]
rs822768	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs822775	0.85[EUR][1000 genomes]
rs843989	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs528649	RARB	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23045200-23052200	Weak transcription	Fetal Heart	heart
2	chr3:23051000-23059400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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