Variant report

Variant	rs528864057
Chromosome Location	chr14:72398476-72398477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:72398360-72399596	MCF-7	breast:	n/a	chr14:72399021-72399028
2	RAD21	chr14:72398454-72399353	HCT-116	colon:	n/a	n/a
3	RAD21	chr14:72398440-72399321	HCT-116	colon:	n/a	n/a
4	CTCF	chr14:72398460-72399379	MCF-7	breast:	n/a	chr14:72399007-72399020
5	POLR2A	chr14:72398370-72398582	MCF-7	breast:	n/a	n/a
6	MAX	chr14:72398406-72399447	HCT-116	colon:	n/a	chr14:72399021-72399028
7	RAD21	chr14:72398456-72399350	MCF-7	breast:	n/a	n/a
8	RAD21	chr14:72398450-72399291	MCF-7	breast:	n/a	n/a
9	E2F6	chr14:72398440-72400169	H1-hESC	embryonic stem cell:	n/a	chr14:72399109-72399119 chr14:72398963-72398973 chr14:72398995-72399004

Variant related genes	Relation type
RGS6	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3425540	chr14:72397724-72400572	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72397800-72398600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:72398000-72399600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr14:72398000-72400800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:72398200-72398600	Active TSS	Psoas Muscle	Psoas
5	chr14:72398200-72398800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr14:72398200-72399000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:72398400-72398600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr14:72398400-72398600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr14:72398400-72398600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr14:72398400-72398600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
11	chr14:72398400-72398600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
12	chr14:72398400-72398600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr14:72398400-72398600	Active TSS	Brain Angular Gyrus	brain
14	chr14:72398400-72398600	Bivalent Enhancer	Brain Germinal Matrix	brain
15	chr14:72398400-72398600	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr14:72398400-72398600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
17	chr14:72398400-72398600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr14:72398400-72398600	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr14:72398400-72398600	Bivalent Enhancer	Fetal Kidney	kidney
20	chr14:72398400-72398600	Bivalent Enhancer	Fetal Lung	lung
21	chr14:72398400-72398600	Bivalent Enhancer	Fetal Stomach	stomach
22	chr14:72398400-72398600	Flanking Bivalent TSS/Enh	A549	lung
23	chr14:72398400-72398800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:72398400-72398800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
25	chr14:72398400-72399000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr14:72398400-72399400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
27	chr14:72398400-72399400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr14:72398400-72399400	Bivalent/Poised TSS	Fetal Brain Female	brain
29	chr14:72398400-72399600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
30	chr14:72398400-72399600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
31	chr14:72398400-72399600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:72398400-72399600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:72398400-72400200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr14:72398400-72400200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr14:72398400-72400200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr14:72398400-72400400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr14:72398400-72400400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr14:72398400-72400400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:72398400-72400400	Bivalent Enhancer	Liver	Liver
40	chr14:72398400-72401600	Active TSS	Right Atrium	heart
41	chr14:72398400-72401800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links