Variant report

Variant	rs528902836
Chromosome Location	chr19:36804840-36804841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP14-1	chr19:36803969-36806639	ENSG00000232677.2

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv960831	chr19:36744378-36813769	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1056901	chr19:36749658-36847486	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv820362	chr19:36749963-36807301	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1061054	chr19:36751703-36847486	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1055260	chr19:36752221-36847486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1056850	chr19:36752663-36847486	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1064983	chr19:36752663-36847625	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1057579	chr19:36752663-36847822	Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1825146	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv1837043	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36799000-36806600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr19:36799400-36806400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36799400-36816400	Weak transcription	Primary T cells from cord blood	blood
4	chr19:36799600-36805600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:36799600-36806600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:36799800-36809600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:36800400-36810000	Weak transcription	Placenta	Placenta
8	chr19:36800600-36806600	Weak transcription	Fetal Stomach	stomach
9	chr19:36800600-36810400	Weak transcription	Esophagus	oesophagus
10	chr19:36800600-36811200	Weak transcription	Pancreas	Pancrea
11	chr19:36800600-36816400	Weak transcription	Ovary	ovary
12	chr19:36800600-36816600	Weak transcription	Spleen	Spleen
13	chr19:36800800-36806400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr19:36800800-36806400	Weak transcription	Left Ventricle	heart
15	chr19:36800800-36806600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:36800800-36808200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:36800800-36810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:36800800-36816400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr19:36800800-36822000	Weak transcription	Psoas Muscle	Psoas
20	chr19:36801000-36806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr19:36801000-36810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:36801000-36816400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr19:36801200-36805600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr19:36801200-36806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:36801200-36806200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:36801200-36806400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr19:36801200-36806400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr19:36801200-36806400	Weak transcription	Fetal Brain Female	brain
29	chr19:36801200-36806600	Weak transcription	Fetal Intestine Large	intestine
30	chr19:36801200-36806600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr19:36801200-36810200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr19:36801200-36810400	Weak transcription	Brain Germinal Matrix	brain
33	chr19:36801200-36814400	Weak transcription	Primary B cells from cord blood	blood
34	chr19:36801200-36816000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:36801200-36816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:36801200-36816400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr19:36801200-36816400	Weak transcription	Adipose Nuclei	Adipose
38	chr19:36801200-36816600	Weak transcription	Right Ventricle	heart
39	chr19:36801200-36817000	Weak transcription	Brain Anterior Caudate	brain
40	chr19:36801200-36817000	Weak transcription	Fetal Kidney	kidney
41	chr19:36801200-36817600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr19:36801600-36809800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr19:36802200-36815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr19:36802600-36805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr19:36802600-36806400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr19:36802800-36816400	Weak transcription	Brain Hippocampus Middle	brain
47	chr19:36803000-36806400	Weak transcription	Fetal Muscle Leg	muscle
48	chr19:36803200-36808000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr19:36804000-36811600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr19:36804000-36820600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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