Variant report

Variant	rs529219
Chromosome Location	chr3:23031200-23031201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs506284	0.87[EUR][1000 genomes]
rs520582	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs528649	0.85[EUR][1000 genomes]
rs535689	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs537660	0.87[EUR][1000 genomes]
rs549968	0.92[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55652823	0.83[EUR][1000 genomes]
rs601598	0.83[EUR][1000 genomes]
rs621200	0.87[EUR][1000 genomes]
rs633464	0.83[EUR][1000 genomes]
rs680930	0.84[CEU][hapmap]
rs681025	0.84[CEU][hapmap]
rs711725	0.86[EUR][1000 genomes]
rs822768	0.86[EUR][1000 genomes]
rs822775	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs529219	RARB	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23029400-23031800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:23029800-23031800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:23030000-23032000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:23030000-23034200	Weak transcription	Left Ventricle	heart
5	chr3:23030200-23038200	Weak transcription	Psoas Muscle	Psoas
6	chr3:23030800-23031800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:23031000-23031200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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