Variant report

Variant	rs529598626
Chromosome Location	chr10:50979449-50979450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:50979405-50979455	NH-A	brain:	n/a
2	chr10:50979405-50979455	AG09319	gingival:	n/a
3	chr10:50979405-50979455	GM19239	blood:	n/a
4	chr10:50979405-50979455	T-47D	breast:	n/a
5	chr10:50979405-50979455	HCT-116	colon:	n/a
6	chr10:50979405-50979455	NHBE	bronchial:	n/a
7	chr10:50979405-50979455	Hela-S3	cervix:	n/a
8	chr10:50979405-50979455	ProgFib	skin:	n/a
9	chr10:50979405-50979455	PFSK-1	brain:	n/a
10	chr10:50979405-50979455	GM12892	blood:	n/a
11	chr10:50979405-50979455	HepG2	liver:	n/a
12	chr10:50979405-50979455	AG04449	skin:	fetal
13	chr10:50979405-50979455	HL-60	blood:	n/a
14	chr10:50979405-50979455	BE2_C	brain:	n/a
15	chr10:50979405-50979455	NHDF-neo	bronchial:	n/a
16	chr10:50979405-50979455	HCF	heart:	n/a
17	chr10:50979405-50979455	SAEC	small airway:	n/a
18	chr10:50979405-50979455	BJ	skin:	n/a
19	chr10:50979405-50979455	Caco-2	colon:	n/a
20	chr10:50979405-50979455	HEEpiC	esophagus:	n/a
21	chr10:50979405-50979455	SK-N-SH	brain:	n/a
22	chr10:50979405-50979455	HRE	kidney:	n/a
23	chr10:50979405-50979455	NB4	blood:	n/a
24	chr10:50979405-50979455	SK-N-SH_RA	brain:	n/a
25	chr10:50979405-50979455	A549	lung:	n/a
26	chr10:50979405-50979455	MCF10A-Er-Src	breast:	n/a
27	chr10:50979405-50979455	AG09309	skin:	n/a
28	chr10:50979405-50979455	Hepatocyte	liver:	n/a
29	chr10:50979405-50979455	HEK293	kidney:	embryo
30	chr10:50979405-50979455	GM12891	blood:	n/a
31	chr10:50979405-50979455	MCF-7	breast:	n/a
32	chr10:50979405-50979455	CMK	blood:	n/a
33	chr10:50979405-50979455	GM06990	blood:	n/a
34	chr10:50979405-50979455	HNPCEpiC	eye:	n/a
35	chr10:50979405-50979455	NT2-D1	testis:	n/a
36	chr10:50979405-50979455	AG10803	skin:	n/a
37	chr10:50979405-50979455	HRPEpiC	eye:	n/a
38	chr10:50979405-50979455	PrEC	prostate:	n/a
39	chr10:50979405-50979455	RPTEC	kidney:	n/a
40	chr10:50979405-50979455	ECC-1	luminal epithelium:	n/a
41	chr10:50979405-50979455	HCPEpiC	choroid plexus:	n/a
42	chr10:50979405-50979455	IMR90	lung:	fetal
43	chr10:50979405-50979455	SK-N-MC	brain:	n/a
44	chr10:50979405-50979455	HCM	heart:	n/a
45	chr10:50979405-50979455	HIPEpiC	eye:	n/a
46	chr10:50979405-50979455	GM12878	blood:	n/a
47	chr10:50979405-50979455	ovcar-3	ovarian:	n/a
48	chr10:50979405-50979455	HAEpiC	amniotic membrane:	n/a
49	chr10:50979405-50979455	H1-hESC	embryonic stem cell:	embryo
50	chr10:50979405-50979455	U87	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000226389	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1048905	chr10:50928727-51019190	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	nsv947980	chr10:50979240-50982868	Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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