Variant report

Variant	rs529783266
Chromosome Location	chr11:72282724-72282725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72282264..72283054-chr2:176032123..176032654,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATG16L2-6	chr11:72282072-72284273	ENSG00000227467

Variant related genes	Relation type
ENSG00000215973	Chromatin interaction
ENSG00000229750	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
3	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
5	nsv468633	chr11:72281884-72336564	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv468634	chr11:72281884-72336564	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv555406	chr11:72281884-72336564	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72269600-72295200	Weak transcription	Right Atrium	heart
2	chr11:72276400-72287800	Weak transcription	Fetal Brain Female	brain
3	chr11:72279800-72282800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:72280000-72283000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:72280000-72283000	Enhancers	HMEC	breast
6	chr11:72280000-72283200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:72280000-72283800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr11:72280400-72284600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:72280800-72283000	Flanking Active TSS	Hela-S3	cervix
10	chr11:72281000-72283200	Enhancers	Fetal Intestine Large	intestine
11	chr11:72281400-72287400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:72281600-72282800	Enhancers	Spleen	Spleen
13	chr11:72281600-72283000	Enhancers	NHEK	skin
14	chr11:72281600-72284600	Weak transcription	HSMMtube	muscle
15	chr11:72281600-72287400	Weak transcription	Brain Angular Gyrus	brain
16	chr11:72281800-72283000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:72281800-72284800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:72282000-72284400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:72282200-72282800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:72282200-72282800	Bivalent Enhancer	Adipose Nuclei	Adipose
21	chr11:72282400-72282800	Flanking Active TSS	HSMM	muscle
22	chr11:72282400-72283000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
23	chr11:72282400-72283600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:72282400-72284600	Weak transcription	Fetal Intestine Small	intestine
25	chr11:72282400-72287600	Weak transcription	Right Ventricle	heart
26	chr11:72282600-72282800	Enhancers	Gastric	stomach
27	chr11:72282600-72282800	Enhancers	Left Ventricle	heart
28	chr11:72282600-72284600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links