Variant report

Variant	rs529789552
Chromosome Location	chr5:178016654-178016655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:178015408..178017355-chr5:178028126..178029814,2	MCF-7	breast:
2	chr5:177631253..177632828-chr5:178016105..178018488,2	MCF-7	breast:
3	chr5:177887805..177889193-chr5:178016576..178017370,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197451	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3431503	chr5:178015746-178018644	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178012800-178016800	Weak transcription	Gastric	stomach
2	chr5:178014600-178018000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr5:178015600-178016800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:178015600-178017800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr5:178015800-178016800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:178015800-178016800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr5:178015800-178016800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr5:178015800-178017200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:178015800-178017200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr5:178015800-178017800	Flanking Active TSS	Right Ventricle	heart
11	chr5:178016000-178016800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:178016000-178016800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:178016000-178016800	Bivalent Enhancer	Lung	lung
14	chr5:178016200-178016800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr5:178016200-178016800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:178016200-178017000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:178016200-178017600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr5:178016200-178017800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:178016200-178018000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr5:178016200-178018200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
21	chr5:178016400-178016800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:178016400-178016800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr5:178016400-178016800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
24	chr5:178016400-178016800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:178016400-178016800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
26	chr5:178016400-178016800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:178016400-178016800	Bivalent Enhancer	Brain Hippocampus Middle	brain
28	chr5:178016400-178016800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr5:178016400-178016800	Bivalent Enhancer	Placenta	Placenta
30	chr5:178016400-178016800	Enhancers	Ovary	ovary
31	chr5:178016400-178016800	Flanking Bivalent TSS/Enh	HMEC	breast
32	chr5:178016400-178017000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:178016400-178017000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr5:178016400-178017000	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr5:178016400-178017000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:178016400-178017000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:178016400-178017000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:178016400-178017000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
39	chr5:178016400-178017000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:178016400-178017600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
41	chr5:178016400-178017800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:178016400-178018000	Active TSS	H9 Cell Line	embryonic stem cell
43	chr5:178016400-178018000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr5:178016600-178016800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr5:178016600-178016800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
46	chr5:178016600-178016800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
47	chr5:178016600-178016800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:178016600-178016800	Flanking Active TSS	Liver	Liver
49	chr5:178016600-178016800	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
50	chr5:178016600-178016800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain

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