Variant report

Variant	rs529880512
Chromosome Location	chr19:19906787-19906788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv911312	chr19:19861682-19917662	Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv458375	chr19:19863014-19949209	Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv578798	chr19:19863014-19949209	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv911313	chr19:19866371-19936078	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv911314	chr19:19866371-20021046	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv519535	chr19:19871250-20595412	Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv911315	chr19:19872093-20021046	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv911316	chr19:19890450-20021046	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv578799	chr19:19901136-19967970	ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv961192	chr19:19906394-20083740	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19888400-19927800	Weak transcription	Psoas Muscle	Psoas
2	chr19:19888600-19906800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:19888600-19909000	Weak transcription	K562	blood
4	chr19:19888600-19911000	Weak transcription	HUVEC	blood vessel
5	chr19:19888600-19931800	Weak transcription	Fetal Heart	heart
6	chr19:19895000-19931200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:19895400-19908200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr19:19895400-19914800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr19:19895400-19914800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:19895600-19907200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr19:19895600-19909000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr19:19895600-19909000	ZNF genes & repeats	Liver	Liver
13	chr19:19895600-19914800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr19:19895600-19915000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr19:19895800-19908200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr19:19895800-19914800	Strong transcription	Dnd41	blood
17	chr19:19896000-19909200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:19896800-19908000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:19897200-19907200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:19897200-19908600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
21	chr19:19897200-19918600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:19897400-19907600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr19:19899600-19907000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr19:19900000-19915200	Weak transcription	HepG2	liver
25	chr19:19900800-19908200	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr19:19901000-19909000	ZNF genes & repeats	GM12878-XiMat	blood
27	chr19:19902000-19914400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:19902600-19922400	Weak transcription	Right Ventricle	heart
29	chr19:19902600-19931600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr19:19902800-19910200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr19:19903000-19908400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr19:19903200-19906800	Weak transcription	Aorta	Aorta
33	chr19:19903200-19906800	Weak transcription	Gastric	stomach
34	chr19:19903200-19906800	Weak transcription	Ovary	ovary
35	chr19:19903200-19906800	Weak transcription	Pancreas	Pancrea
36	chr19:19903200-19916400	Weak transcription	Fetal Brain Male	brain
37	chr19:19903800-19911000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:19903800-19911000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr19:19904000-19908400	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr19:19904200-19907000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
41	chr19:19904200-19907000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:19904200-19907000	Strong transcription	Placenta	Placenta
43	chr19:19904200-19907600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
44	chr19:19904200-19907800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:19904200-19908000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr19:19904200-19908200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
47	chr19:19904200-19908200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr19:19904200-19908200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr19:19904200-19908400	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr19:19904200-19908800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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