Variant report

Variant	rs530205272
Chromosome Location	chr3:23278290-23278291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23267196..23270682-chr3:23275861..23279079,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:23270600-23278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:23272600-23283000	Weak transcription	HMEC	breast
4	chr3:23274400-23280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:23274600-23279800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:23274600-23281400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:23274600-23283000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:23274800-23280200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:23274800-23298200	Weak transcription	Aorta	Aorta
10	chr3:23275000-23280800	Weak transcription	Brain Anterior Caudate	brain
11	chr3:23276400-23279600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:23276800-23281000	Weak transcription	Fetal Heart	heart
13	chr3:23277000-23279600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:23277400-23279800	Weak transcription	Psoas Muscle	Psoas
15	chr3:23277400-23280800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:23277800-23278400	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:23277800-23278400	Enhancers	Brain Substantia Nigra	brain
18	chr3:23277800-23278400	Enhancers	Fetal Lung	lung
19	chr3:23277800-23278600	Enhancers	Fetal Thymus	thymus
20	chr3:23277800-23278800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:23277800-23279200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:23278000-23278400	Enhancers	Brain Cingulate Gyrus	brain
23	chr3:23278000-23278600	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:23278000-23280200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:23278200-23278400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:23278200-23278400	Enhancers	Right Ventricle	heart
27	chr3:23278200-23278600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:23278200-23278600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:23278200-23278600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:23278200-23278600	Enhancers	Adipose Nuclei	Adipose
31	chr3:23278200-23278600	Enhancers	Brain Angular Gyrus	brain
32	chr3:23278200-23278800	Enhancers	Left Ventricle	heart
33	chr3:23278200-23279000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr3:23278200-23279200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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