The 2.0 version of rSNPBase

Variant report

Variant rs530511308
Chromosome Location chr3:23522049-23522050
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23512000-23523000 Weak transcription Psoas Muscle Psoas
2 chr3:23512000-23527400 Weak transcription Left Ventricle heart
3 chr3:23513400-23522800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr3:23513800-23527400 Weak transcription Right Atrium heart
5 chr3:23519400-23522200 ZNF genes & repeats Primary B cells from cord blood blood
6 chr3:23520400-23522200 ZNF genes & repeats Primary B cells from peripheral blood blood
7 chr3:23520400-23522200 ZNF genes & repeats Fetal Thymus thymus
8 chr3:23520600-23522200 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
9 chr3:23520600-23522200 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr3:23520600-23522200 ZNF genes & repeats Fetal Muscle Trunk muscle
11 chr3:23520600-23522200 ZNF genes & repeats GM12878-XiMat blood
12 chr3:23521000-23522800 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr3:23521000-23527600 Weak transcription Right Ventricle heart
14 chr3:23521000-23531800 Weak transcription NHDF-Ad bronchial
15 chr3:23521200-23522200 Enhancers Brain Hippocampus Middle brain
16 chr3:23521200-23522200 Enhancers Brain Substantia Nigra brain
17 chr3:23521200-23523000 Enhancers Brain Cingulate Gyrus brain
18 chr3:23521200-23527600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr3:23521400-23522600 Weak transcription Fetal Kidney kidney
20 chr3:23521400-23522600 Weak transcription Fetal Lung lung
21 chr3:23521400-23523400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr3:23521600-23522200 Enhancers H1 Cell Line embryonic stem cell
23 chr3:23521600-23522600 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr3:23521600-23522600 Enhancers iPS-20b Cell Line embryonic stem cell
25 chr3:23521600-23523400 Enhancers HUES6 Cell Line embryonic stem cell
26 chr3:23521600-23527400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr3:23521600-23532000 Weak transcription Stomach Smooth Muscle stomach
28 chr3:23521800-23522200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
29 chr3:23521800-23522400 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr3:23521800-23523000 Weak transcription Brain Angular Gyrus brain
31 chr3:23521800-23523000 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr3:23521800-23523600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr3:23521800-23524000 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr3:23521800-23527400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr3:23521800-23527600 Weak transcription Spleen Spleen
36 chr3:23521800-23528600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr3:23522000-23522400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr3:23522000-23522600 Weak transcription Fetal Muscle Leg muscle
39 chr3:23522000-23523000 Weak transcription HSMMtube muscle
40 chr3:23522000-23523200 Weak transcription Brain Inferior Temporal Lobe brain
41 chr3:23522000-23525800 Enhancers iPS-15b Cell Line embryonic stem cell
42 chr3:23522000-23527400 Weak transcription Thymus Thymus
43 chr3:23522000-23527400 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr3:23522000-23527800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr3:23522000-23531000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr3:23522000-23531200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015