Variant report

Variant	rs531027415
Chromosome Location	chr5:17070756-17070757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:17068695..17071363-chr5:17076784..17079484,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015247	chr5:16748966-17133274	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv3510797	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3510798	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1795984	chr5:16973769-17078295	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1017222	chr5:17001819-17133274	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1021972	chr5:17011758-17091878	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1026025	chr5:17039665-17195440	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1027435	chr5:17068441-17095350	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv969212	chr5:17070735-17098476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17068400-17076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:17069600-17070800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:17069600-17070800	Enhancers	Ovary	ovary
4	chr5:17069600-17071000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:17069600-17071000	Enhancers	Fetal Lung	lung
6	chr5:17069600-17071400	Enhancers	Stomach Mucosa	stomach
7	chr5:17069600-17071600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:17069800-17070800	Enhancers	Fetal Stomach	stomach
9	chr5:17069800-17070800	Enhancers	HSMMtube	muscle
10	chr5:17069800-17071200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:17069800-17071200	Enhancers	HUVEC	blood vessel
12	chr5:17069800-17071400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr5:17070000-17070800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:17070000-17070800	Flanking Active TSS	A549	lung
15	chr5:17070000-17071000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:17070000-17071000	Enhancers	Duodenum Mucosa	Duodenum
17	chr5:17070000-17071000	Flanking Active TSS	Hela-S3	cervix
18	chr5:17070000-17071000	Enhancers	K562	blood
19	chr5:17070000-17071200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:17070000-17071400	Enhancers	NHEK	skin
21	chr5:17070200-17071000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:17070200-17071000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:17070200-17071000	Enhancers	Adipose Nuclei	Adipose
24	chr5:17070200-17071000	Enhancers	HSMM	muscle
25	chr5:17070200-17071400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr5:17070400-17075000	Weak transcription	Fetal Kidney	kidney
27	chr5:17070600-17071000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:17070600-17076000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:17070600-17076000	Weak transcription	Left Ventricle	heart
30	chr5:17070600-17076200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:17070600-17079800	Weak transcription	Gastric	stomach
32	chr5:17070600-17080600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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