Variant report

Variant	rs531221936
Chromosome Location	chr5:178012285-178012286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178011858..178014216-chr5:178015047..178017974,2	MCF-7	breast:
2	chr5:178006099..178008478-chr5:178010854..178012707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050767	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3425883	chr5:178010406-178014606	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3335979	chr5:178012283-178013184	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178004200-178012400	Weak transcription	Right Atrium	heart
2	chr5:178004600-178012400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:178005000-178012400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:178005200-178012400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:178005400-178012400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:178005400-178012400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:178005400-178012400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:178005400-178012400	Weak transcription	Gastric	stomach
9	chr5:178009800-178012400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:178010000-178012400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:178011000-178012400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:178011400-178012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:178011600-178012600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr5:178011800-178012800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
15	chr5:178012000-178012400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:178012000-178012600	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr5:178012200-178012400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:178012200-178012400	Weak transcription	Fetal Stomach	stomach
19	chr5:178012200-178012600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr5:178012200-178012800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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