Variant report

Variant	rs531371306
Chromosome Location	chr4:88062790-88062791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88062349..88065075-chr4:88140777..88142398,2	K562	blood:
2	chr4:88052309..88054670-chr4:88061285..88063216,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145332	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv879526	chr4:88062611-88087832	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88019000-88072200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:88026400-88063600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:88035600-88063800	Strong transcription	Primary T cells from cord blood	blood
4	chr4:88036400-88063600	Weak transcription	Fetal Brain Male	brain
5	chr4:88042800-88069400	Strong transcription	Placenta	Placenta
6	chr4:88043400-88064800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:88043600-88064600	Strong transcription	GM12878-XiMat	blood
8	chr4:88044600-88067600	Strong transcription	Primary B cells from cord blood	blood
9	chr4:88045600-88063800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:88045600-88063800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:88045800-88063000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:88045800-88067600	Strong transcription	Fetal Thymus	thymus
13	chr4:88046200-88064200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:88047200-88067000	Strong transcription	Liver	Liver
15	chr4:88047800-88064200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:88049400-88064200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:88053600-88082000	Weak transcription	HSMM	muscle
18	chr4:88054400-88066800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:88055200-88102800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:88055400-88072200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:88055600-88065400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:88055600-88072200	Weak transcription	Fetal Kidney	kidney
23	chr4:88055800-88068200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:88056200-88062800	Weak transcription	Psoas Muscle	Psoas
25	chr4:88056200-88063600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:88056200-88067400	Weak transcription	HSMMtube	muscle
27	chr4:88056400-88064400	Weak transcription	Fetal Heart	heart
28	chr4:88056600-88090600	Weak transcription	Brain Angular Gyrus	brain
29	chr4:88056800-88063600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:88057000-88065600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:88057800-88063800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:88057800-88065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:88057800-88068800	Weak transcription	Right Ventricle	heart
34	chr4:88057800-88072600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:88057800-88073800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:88057800-88074000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:88058200-88063800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:88058200-88063800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:88058200-88064200	Weak transcription	NH-A	brain
40	chr4:88058200-88064400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:88058200-88066600	Weak transcription	NHEK	skin
42	chr4:88058200-88067200	Weak transcription	Aorta	Aorta
43	chr4:88058200-88067400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:88058200-88068000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:88058200-88068600	Weak transcription	Gastric	stomach
46	chr4:88058200-88082400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:88058200-88109000	Weak transcription	Lung	lung
48	chr4:88058400-88063400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:88058400-88068000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:88058400-88074000	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links