The 2.0 version of rSNPBase

Variant report

Variant rs531510572
Chromosome Location chr12:63228949-63228950
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:63207200-63231200 Weak transcription Pancreas Pancrea
2 chr12:63212400-63229000 Weak transcription iPS-20b Cell Line embryonic stem cell
3 chr12:63212600-63234600 Weak transcription Primary hematopoietic stem cells blood
4 chr12:63218400-63234800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr12:63221600-63234200 Weak transcription Primary monocytes fromperipheralblood blood
6 chr12:63222200-63235200 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr12:63223800-63229200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr12:63225400-63237600 Weak transcription Liver Liver
9 chr12:63225600-63231800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr12:63225800-63230200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
11 chr12:63226000-63234200 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr12:63226000-63234600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr12:63226200-63240600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr12:63226400-63234000 Weak transcription HepG2 liver
15 chr12:63226600-63229200 Enhancers K562 blood
16 chr12:63227600-63231000 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr12:63227600-63237200 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr12:63227800-63229200 Enhancers Brain Substantia Nigra brain
19 chr12:63228000-63229000 Enhancers Adipose Nuclei Adipose
20 chr12:63228000-63229200 Enhancers ES-WA7 Cell Line embryonic stem cell
21 chr12:63228000-63229200 Enhancers HUES6 Cell Line embryonic stem cell
22 chr12:63228000-63229400 Enhancers Brain Hippocampus Middle brain
23 chr12:63228200-63229000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr12:63228200-63229200 Enhancers Ovary ovary
25 chr12:63228200-63229200 Enhancers Skeletal Muscle Male skeletal muscle
26 chr12:63228200-63229400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr12:63228400-63229000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr12:63228400-63229200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr12:63228400-63229400 Flanking Active TSS Muscle Satellite Cultured Cells --
30 chr12:63228400-63234000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr12:63228600-63229000 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr12:63228600-63229000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr12:63228600-63229000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr12:63228600-63229000 Flanking Active TSS Brain Angular Gyrus brain
35 chr12:63228600-63229000 Flanking Active TSS Brain Inferior Temporal Lobe brain
36 chr12:63228600-63229000 Weak transcription Duodenum Mucosa Duodenum
37 chr12:63228600-63229000 Enhancers Skeletal Muscle Female skeletal muscle
38 chr12:63228600-63229000 Active TSS Stomach Smooth Muscle stomach
39 chr12:63228600-63229000 Flanking Active TSS HSMM muscle
40 chr12:63228600-63229000 Flanking Active TSS NH-A brain
41 chr12:63228600-63229000 Flanking Active TSS NHLF lung
42 chr12:63228600-63229200 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr12:63228600-63229200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr12:63228600-63229200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr12:63228600-63229200 Flanking Active TSS Osteobl bone
46 chr12:63228600-63234000 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr12:63228600-63237600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr12:63228800-63229000 Active TSS Aorta Aorta
49 chr12:63228800-63229000 Enhancers Brain Cingulate Gyrus brain
50 chr12:63228800-63229000 Enhancers Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015