Variant report

Variant	rs532295933
Chromosome Location	chr3:139164616-139164617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139164444..139166894-chr3:139178847..139180451,2	K562	blood:
2	chr3:139156554..139158574-chr3:139162722..139165410,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRPS22-1	chr3:139163021-139165157	NONHSAT092369

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2760754	chr3:139144615-139164874	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000519	chr3:139159300-139206245	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752377	chr3:139163302-139188302	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139136400-139166200	Weak transcription	Fetal Brain Female	brain
2	chr3:139138600-139166200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:139138600-139170400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:139141400-139167000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:139142200-139172200	Weak transcription	Fetal Heart	heart
6	chr3:139142800-139169000	Weak transcription	Aorta	Aorta
7	chr3:139142800-139176800	Weak transcription	Fetal Stomach	stomach
8	chr3:139144800-139173200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:139145200-139170400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:139149800-139170600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:139154000-139167000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:139154200-139165600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:139154200-139168200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:139154200-139171200	Weak transcription	Right Atrium	heart
15	chr3:139154200-139173600	Weak transcription	Ovary	ovary
16	chr3:139154200-139178600	Weak transcription	Left Ventricle	heart
17	chr3:139154400-139166200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:139154400-139167000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:139154800-139165200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:139158600-139166200	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:139158600-139172600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:139158600-139174800	Weak transcription	Adipose Nuclei	Adipose
23	chr3:139158800-139166000	Weak transcription	HSMMtube	muscle
24	chr3:139160200-139174800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:139160600-139170200	Weak transcription	Lung	lung
26	chr3:139160600-139174800	Weak transcription	Fetal Brain Male	brain
27	chr3:139161000-139164800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:139161400-139166200	Weak transcription	Brain Germinal Matrix	brain
29	chr3:139161400-139168800	Weak transcription	Fetal Intestine Large	intestine
30	chr3:139162800-139166600	Enhancers	Brain Hippocampus Middle	brain
31	chr3:139162800-139167600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr3:139163000-139170000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:139163400-139189000	Weak transcription	Small Intestine	intestine
34	chr3:139163800-139165400	Weak transcription	Brain Anterior Caudate	brain
35	chr3:139163800-139180200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:139164200-139165000	Weak transcription	Brain Substantia Nigra	brain
37	chr3:139164400-139166200	Weak transcription	Brain Angular Gyrus	brain

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