Variant report

Variant	rs532538
Chromosome Location	chr10:25590161-25590162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10741075	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741077	0.81[CHB][hapmap]
rs10828770	0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828774	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs10828778	0.81[CHB][hapmap]
rs11014490	0.92[ASN][1000 genomes]
rs1148154	0.83[CEU][hapmap]
rs1245966	0.92[ASN][1000 genomes]
rs1245967	0.92[ASN][1000 genomes]
rs1329259	0.81[CHB][hapmap]
rs1329263	0.81[CHB][hapmap]
rs1329265	0.81[CHB][hapmap]
rs1341964	0.81[CHB][hapmap]
rs1341966	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs1410932	0.81[CHB][hapmap]
rs1413397	0.80[CHB][hapmap]
rs1576317	0.81[CHB][hapmap]
rs1590836	0.81[CHB][hapmap]
rs1591249	0.81[CHB][hapmap]
rs1612200	0.81[CHB][hapmap]
rs1628986	0.83[CEU][hapmap]
rs1754251	0.84[CEU][hapmap]
rs1754253	0.84[CEU][hapmap]
rs1754260	0.81[CHB][hapmap]
rs1754268	0.81[CHB][hapmap]
rs1760716	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs1760718	0.84[CEU][hapmap]
rs1760733	0.81[CHB][hapmap]
rs1760755	0.86[ASN][1000 genomes]
rs1760758	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs1760759	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs1760762	0.81[CHB][hapmap]
rs1760763	0.81[CHB][hapmap]
rs1760766	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs1760767	0.83[CEU][hapmap]
rs1773608	0.81[CHB][hapmap]
rs1773612	0.81[CHB][hapmap]
rs1773614	0.81[CHB][hapmap]
rs1773617	0.81[CHB][hapmap]
rs1773618	0.81[CHB][hapmap]
rs1773622	0.81[CHB][hapmap]
rs1773623	0.81[CHB][hapmap]
rs1773625	0.83[CEU][hapmap]
rs1773648	0.83[ASN][1000 genomes]
rs1773649	0.94[CEU][hapmap];0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs1773650	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs1773651	0.86[ASN][1000 genomes]
rs1812401	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs1855461	0.81[CHB][hapmap]
rs2262989	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2795044	0.84[CEU][hapmap]
rs2807245	0.85[ASN][1000 genomes]
rs2807247	0.80[ASN][1000 genomes]
rs2807248	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2807250	0.86[CHB][hapmap]
rs2807253	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs2807255	0.84[CEU][hapmap]
rs4351726	0.81[CHB][hapmap]
rs4423091	0.94[ASN][1000 genomes]
rs476972	0.84[ASN][1000 genomes]
rs489052	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs489186	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs495338	0.84[CEU][hapmap];0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs495456	0.90[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs509285	0.89[CEU][hapmap];0.93[CHB][hapmap];0.92[YRI][hapmap]
rs516071	0.89[CEU][hapmap];0.93[CHB][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs518751	0.81[ASN][1000 genomes]
rs541206	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs543850	0.93[CHB][hapmap]
rs558947	0.86[CHB][hapmap]
rs573812	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs578033	0.92[ASN][1000 genomes]
rs7079892	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs7100128	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922827	0.95[ASN][1000 genomes]
rs824145	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824146	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824147	0.86[CHB][hapmap]
rs824590	0.81[CHB][hapmap]
rs824598	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25582000-25592000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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