Variant report

Variant	rs532626070
Chromosome Location	chr6:150464100-150464101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:150464050-150464291	K562	blood:	n/a	chr6:150464240-150464251 chr6:150464112-150464126
2	TCF7L2	chr6:150463706-150464941	HCT-116	colon:	n/a	n/a
3	MAX	chr6:150464067-150464391	K562	blood:	n/a	n/a
4	MAX	chr6:150463421-150464547	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
5	POLR2A	chr6:150463420-150464752	MCF10A-Er-Src	breast:	n/a	n/a
6	E2F6	chr6:150463866-150464909	H1-hESC	embryonic stem cell:	n/a	chr6:150464007-150464019 chr6:150464164-150464175 chr6:150464007-150464016 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015
7	UBTF	chr6:150463712-150465747	K562	blood:	n/a	n/a
8	TEAD4	chr6:150463398-150464420	ECC-1	luminal epithelium:	n/a	chr6:150463668-150463677
9	EGR1	chr6:150463852-150464163	K562	blood:	n/a	chr6:150464138-150464148 chr6:150464025-150464036
10	ZBTB7A	chr6:150463863-150464558	K562	blood:	n/a	n/a
11	TCF12	chr6:150463484-150464482	ECC-1	luminal epithelium:	n/a	n/a
12	MAZ	chr6:150463941-150464584	K562	blood:	n/a	chr6:150463947-150463956
13	ELF1	chr6:150463804-150464245	K562	blood:	n/a	n/a
14	POLR2A	chr6:150464084-150464319	K562	blood:	n/a	n/a
15	POLR2A	chr6:150464056-150464550	MCF-7	breast:	n/a	n/a
16	TAF1	chr6:150464011-150464327	K562	blood:	n/a	n/a
17	CCNT2	chr6:150463711-150465001	K562	blood:	n/a	chr6:150464656-150464665
18	MYC	chr6:150463995-150464522	K562	blood:	n/a	n/a
19	POLR2A	chr6:150463702-150465476	H1-neurons	neurons:	n/a	n/a
20	POLR2A	chr6:150463834-150464613	HEK293	kidney:	n/a	n/a
21	TCF12	chr6:150464036-150464315	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr6:150464007-150464360	HCT-116	colon:	n/a	n/a
23	HEY1	chr6:150464075-150464398	K562	blood:	n/a	chr6:150464194-150464209
24	MAX	chr6:150463602-150465499	K562	blood:	n/a	chr6:150463947-150463956
25	BHLHE40	chr6:150463969-150464551	K562	blood:	n/a	n/a
26	MYC	chr6:150464022-150464598	K562	blood:	n/a	n/a
27	MAX	chr6:150463401-150465404	HCT-116	colon:	n/a	chr6:150463947-150463956
28	ZBTB7A	chr6:150463581-150464323	ECC-1	luminal epithelium:	n/a	n/a
29	RCOR1	chr6:150463908-150464239	K562	blood:	n/a	n/a
30	MAX	chr6:150464060-150464333	K562	blood:	n/a	n/a
31	TBP	chr6:150463968-150464501	K562	blood:	n/a	n/a
32	MAX	chr6:150463355-150464742	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
33	MAX	chr6:150463976-150464685	H1-hESC	embryonic stem cell:	n/a	n/a
34	MYC	chr6:150463472-150464426	MCF10A-Er-Src	breast:	n/a	chr6:150463947-150463956
35	HMGN3	chr6:150463748-150465028	K562	blood:	n/a	n/a
36	E2F6	chr6:150463764-150465515	K562	blood:	n/a	chr6:150464007-150464019 chr6:150464164-150464175 chr6:150464007-150464016 chr6:150465369-150465379 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015
37	E2F6	chr6:150463966-150464701	H1-hESC	embryonic stem cell:	n/a	chr6:150464007-150464019 chr6:150464164-150464175 chr6:150464007-150464016 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015
38	NFIC	chr6:150463642-150464398	ECC-1	luminal epithelium:	n/a	n/a
39	REST	chr6:150464082-150465547	H1-neurons	neurons:	n/a	n/a
40	POLR2A	chr6:150463993-150465949	H1-neurons	neurons:	n/a	n/a
41	E2F4	chr6:150463888-150464341	K562	blood:	n/a	chr6:150464007-150464019 chr6:150464007-150464016 chr6:150464006-150464017 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015
42	ZNF263	chr6:150463467-150465482	K562	blood:	n/a	chr6:150464144-150464153
43	POLR2A	chr6:150464017-150464412	K562	blood:	n/a	n/a
44	TCF7L2	chr6:150463742-150464313	HEK293	kidney:	n/a	n/a
45	POLR2A	chr6:150463974-150464363	HCT-116	colon:	n/a	n/a
46	GABPA	chr6:150464090-150464655	H1-hESC	embryonic stem cell:	n/a	chr6:150464317-150464326 chr6:150464201-150464210 chr6:150464641-150464650 chr6:150464199-150464208
47	YY1	chr6:150464100-150464542	K562	blood:	n/a	chr6:150464240-150464251 chr6:150464112-150464126
48	CBX3	chr6:150463796-150464328	K562	blood:	n/a	n/a
49	E2F6	chr6:150463673-150464987	K562	blood:	n/a	chr6:150464007-150464019 chr6:150464164-150464175 chr6:150464007-150464016 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015
50	E2F6	chr6:150463939-150464330	A549	lung:	n/a	chr6:150464007-150464019 chr6:150464164-150464175 chr6:150464007-150464016 chr6:150464188-150464198 chr6:150464165-150464177 chr6:150464135-150464147 chr6:150464008-150464015 chr6:150464008-150464015 chr6:150464008-150464015

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150464023..150466191-chr6:150484823..150488710,3	K562	blood:

Variant related genes	Relation type
PPP1R14C	TF binding region
ENSG00000238594	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Placenta	Placenta
4	chr6:150463200-150464600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr6:150463200-150464800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:150463200-150464800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:150463200-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:150463200-150465000	Bivalent/Poised TSS	A549	lung
11	chr6:150463200-150465200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:150463200-150465200	Bivalent Enhancer	Spleen	Spleen
13	chr6:150463200-150465400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:150463200-150465400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr6:150463200-150465600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:150463200-150466600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:150463400-150464200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
18	chr6:150463400-150464400	Bivalent/Poised TSS	HSMMtube	muscle
19	chr6:150463400-150464400	Active TSS	Osteobl	bone
20	chr6:150463400-150464600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr6:150463400-150464600	Active TSS	Aorta	Aorta
22	chr6:150463400-150464600	Bivalent/Poised TSS	HSMM	muscle
23	chr6:150463400-150464800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:150463400-150464800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:150463400-150465000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr6:150463400-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:150463400-150465000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:150463400-150465000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
29	chr6:150463400-150465000	Active TSS	Fetal Kidney	kidney
30	chr6:150463400-150465200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:150463400-150465200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
32	chr6:150463400-150465400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:150463400-150465400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
34	chr6:150463400-150465400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:150463400-150465600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:150463400-150465600	Active TSS	Psoas Muscle	Psoas
37	chr6:150463400-150465800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr6:150463600-150464200	Bivalent/Poised TSS	Colonic Mucosa	Colon
39	chr6:150463600-150464200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
40	chr6:150463600-150464200	Bivalent/Poised TSS	Ovary	ovary
41	chr6:150463600-150464200	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr6:150463600-150464400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:150463600-150464400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:150463600-150464400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:150463600-150464400	Enhancers	Liver	Liver
46	chr6:150463600-150464400	Active TSS	Brain Anterior Caudate	brain
47	chr6:150463600-150464400	Active TSS	Brain Substantia Nigra	brain
48	chr6:150463600-150464600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:150463600-150464600	Active TSS	Esophagus	oesophagus
50	chr6:150463600-150464600	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links