Variant report

Variant	rs532967
Chromosome Location	chr12:117732339-117732340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3782202	0.85[GIH][hapmap];0.88[MEX][hapmap];0.81[EUR][1000 genomes]
rs3782203	0.85[GIH][hapmap];0.81[EUR][1000 genomes]
rs488484	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs499813	0.93[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs508304	0.88[EUR][1000 genomes]
rs552275	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6490123	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7139256	0.85[GIH][hapmap];0.88[MEX][hapmap]
rs884846	0.82[EUR][1000 genomes]
rs884847	0.85[GIH][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes]
rs9658350	0.82[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs532967	DDX54	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:117731600-117732600	Enhancers	Brain Germinal Matrix	brain
4	chr12:117731800-117732400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:117731800-117732400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:117731800-117732800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:117732000-117732400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:117732000-117732400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:117732000-117732400	Enhancers	Esophagus	oesophagus
10	chr12:117732000-117732600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:117732000-117732600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr12:117732000-117732800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:117732000-117732800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr12:117732200-117732600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:117732200-117732600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links