Variant report

Variant	rs533028825
Chromosome Location	chr8:100698711-100698712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
8	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1023922	chr8:100474230-100702005	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
12	nsv831408	chr8:100523523-100721507	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
13	esv20740	chr8:100698324-100701511	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3480575	chr8:100698424-100701711	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3480576	chr8:100698424-100701711	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100675400-100706000	Weak transcription	Left Ventricle	heart
2	chr8:100687000-100739800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:100688400-100708200	Weak transcription	HSMMtube	muscle
4	chr8:100688600-100705600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:100688800-100698800	Weak transcription	Gastric	stomach
6	chr8:100688800-100704600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:100688800-100711400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:100688800-100716000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:100689000-100698800	Weak transcription	Thymus	Thymus
10	chr8:100692000-100711800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:100692800-100698800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:100695200-100708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:100695200-100709800	Weak transcription	Pancreas	Pancrea
14	chr8:100696000-100700000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:100697600-100700800	Strong transcription	Primary T cells from cord blood	blood
16	chr8:100697800-100699000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:100697800-100700400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:100698000-100698800	Enhancers	NHEK	skin
19	chr8:100698000-100699000	ZNF genes & repeats	Placenta	Placenta
20	chr8:100698000-100699000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr8:100698000-100699800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr8:100698000-100699800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:100698000-100716000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:100698200-100698800	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr8:100698200-100699000	Enhancers	K562	blood
26	chr8:100698200-100699200	Enhancers	Stomach Mucosa	stomach
27	chr8:100698200-100699600	Strong transcription	Ovary	ovary
28	chr8:100698200-100699800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr8:100698200-100700000	Strong transcription	Primary B cells from cord blood	blood
30	chr8:100698200-100700000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:100698200-100700000	ZNF genes & repeats	Fetal Stomach	stomach
32	chr8:100698200-100714600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:100698400-100698800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:100698400-100698800	Weak transcription	Adipose Nuclei	Adipose
35	chr8:100698400-100699000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:100698400-100699200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:100698400-100699400	Strong transcription	Aorta	Aorta
38	chr8:100698400-100699400	Strong transcription	Fetal Lung	lung
39	chr8:100698400-100699600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
40	chr8:100698400-100699600	Strong transcription	Fetal Intestine Large	intestine
41	chr8:100698400-100699800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:100698400-100699800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:100698400-100699800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:100698400-100699800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:100698400-100699800	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr8:100698400-100700000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:100698400-100702200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr8:100698400-100702200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:100698400-100702400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:100698400-100709800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links