Variant report

Variant	rs533230867
Chromosome Location	chr15:77092410-77092411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:77092140-77092420	K562	blood:	n/a	chr15:77092302-77092317
2	CUX1	chr15:77092262-77092459	K562	blood:	n/a	n/a
3	MAFK	chr15:77092130-77092498	IMR90	lung:	n/a	chr15:77092302-77092317
4	CEBPB	chr15:77092148-77092465	A549	lung:	n/a	n/a
5	CEBPB	chr15:77092177-77092463	A549	lung:	n/a	n/a
6	JUND	chr15:77092160-77092453	HepG2	liver:	n/a	chr15:77092313-77092324
7	FOSL2	chr15:77092143-77092410	A549	lung:	n/a	n/a
8	MAFF	chr15:77092229-77092429	HepG2	liver:	n/a	n/a
9	CEBPB	chr15:77092102-77092498	IMR90	lung:	n/a	n/a
10	MAFK	chr15:77092284-77092439	H1-hESC	embryonic stem cell:	n/a	chr15:77092302-77092317
11	FOS	chr15:77092113-77092496	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr15:77092175-77092446	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr15:77092260-77092410	HBMEC	blood vessel:	n/a	n/a
14	FOS	chr15:77092135-77092508	MCF10A-Er-Src	breast:	n/a	n/a
15	JUN	chr15:77091994-77092689	K562	blood:	n/a	n/a
16	FOSL2	chr15:77092166-77092538	MCF-7	breast:	n/a	n/a
17	BACH1	chr15:77092170-77092438	H1-hESC	embryonic stem cell:	n/a	n/a
18	CEBPB	chr15:77092195-77092457	MCF-7	breast:	n/a	n/a
19	MAFK	chr15:77092170-77092441	HepG2	liver:	n/a	chr15:77092302-77092317
20	JUND	chr15:77092140-77092488	K562	blood:	n/a	chr15:77092313-77092324
21	E2F4	chr15:77092157-77092463	MCF10A-Er-Src	breast:	n/a	n/a
22	FOS	chr15:77092135-77092499	MCF10A-Er-Src	breast:	n/a	n/a
23	FOSL2	chr15:77092066-77092532	A549	lung:	n/a	n/a
24	MYC	chr15:77092216-77092425	MCF10A-Er-Src	breast:	n/a	n/a
25	FOS	chr15:77092136-77092505	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
SCAPER	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	esv3356461	chr15:77091866-77092490	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3410900	chr15:77091876-77092489	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:77058000-77100200	Weak transcription	Fetal Brain Male	brain
5	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:77070000-77093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:77070000-77097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:77073000-77093800	Weak transcription	Gastric	stomach
9	chr15:77073000-77101000	Weak transcription	Lung	lung
10	chr15:77073000-77101400	Weak transcription	Right Ventricle	heart
11	chr15:77073000-77109200	Weak transcription	Spleen	Spleen
12	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
13	chr15:77076600-77098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:77078200-77103000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:77079600-77097800	Weak transcription	HSMMtube	muscle
16	chr15:77082600-77096400	Weak transcription	Colonic Mucosa	Colon
17	chr15:77083600-77097600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:77083800-77095000	Weak transcription	Brain Anterior Caudate	brain
19	chr15:77083800-77095600	Weak transcription	Fetal Lung	lung
20	chr15:77083800-77097800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:77083800-77098000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:77084000-77100400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:77084000-77100600	Weak transcription	GM12878-XiMat	blood
24	chr15:77084000-77100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:77084400-77098000	Weak transcription	Small Intestine	intestine
26	chr15:77084800-77092600	Weak transcription	HepG2	liver
27	chr15:77084800-77098200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:77085200-77097200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:77085200-77098400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:77085400-77096600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:77085400-77125000	Weak transcription	HSMM	muscle
32	chr15:77085600-77094200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:77085800-77104400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:77086200-77097600	Weak transcription	Hela-S3	cervix
35	chr15:77086200-77097800	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:77086400-77097800	Weak transcription	Brain Germinal Matrix	brain
37	chr15:77086400-77098400	Weak transcription	Brain Substantia Nigra	brain
38	chr15:77086400-77100600	Weak transcription	Aorta	Aorta
39	chr15:77086400-77101600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:77086400-77111000	Weak transcription	Thymus	Thymus
41	chr15:77086600-77094600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr15:77086600-77094800	Weak transcription	Brain Angular Gyrus	brain
43	chr15:77086600-77095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:77086600-77095400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:77086600-77095600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:77086600-77095600	Weak transcription	Left Ventricle	heart
47	chr15:77086800-77094800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:77086800-77094800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:77087000-77096000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:77087200-77098400	Weak transcription	Rectal Mucosa Donor 29	rectum

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